View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21695_high_4 (Length: 372)
Name: NF21695_high_4
Description: NF21695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21695_high_4 |
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| [»] scaffold0881 (1 HSPs) |
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| [»] scaffold0634 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 2e-56; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 8724608 - 8724731
Alignment:
| Q |
171 |
atagatggcttgaagggtcactctatactttttgaagaaagtcatgcaatcagtgaagaagaggtgaaattcgaaaagcggagcagtggaaaaagtagtc |
270 |
Q |
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| T |
8724608 |
atagatggcttgaagggtcactctatactttttgaagaaagtcatgcaattagtgaagaagaggtgaaattcgaaaagcggagcagtggaaaaagcagac |
8724707 |
T |
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| Q |
271 |
cccaaaagaagatggatcccaaga |
294 |
Q |
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| T |
8724708 |
cccaaaagaagatggatcccaaga |
8724731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 136
Target Start/End: Original strand, 8724436 - 8724548
Alignment:
| Q |
24 |
tcatcaataatattgattttctttcgtcaagtgtgatttctttgattaatcaggtgaggtatcatactatattttaaagaatgaatttgccatagcatta |
123 |
Q |
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| T |
8724436 |
tcatcgataatattgattttctttcgtcaagtgtgatttctttgattaatcaggtgaggtatcatactatattttaaagaatgaatttgtcatagcatta |
8724535 |
T |
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| Q |
124 |
gtaacttgataca |
136 |
Q |
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| T |
8724536 |
gtaacttgataca |
8724548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 8711319 - 8711438
Alignment:
| Q |
175 |
atggcttgaagggtcactctatactttttgaagaaagtcatgcaatcagtgaagaagaggtgaaattcgaaaagcggagcagtggaaaaagtagtcccca |
274 |
Q |
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| T |
8711319 |
atggcatgaagggtcactctatactttttgaagaaagtcatgcaattagtgaagaagaggtgaaatttgaaaaacggagcagtggaaaaagtagtcccca |
8711418 |
T |
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| Q |
275 |
aaagaagatggatcccaaga |
294 |
Q |
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| T |
8711419 |
aaagaagatggatcccaaga |
8711438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 175 - 294
Target Start/End: Original strand, 8731240 - 8731359
Alignment:
| Q |
175 |
atggcttgaagggtcactctatactttttgaagaaagtcatgcaatcagtgaagaagaggtgaaattcgaaaagcggagcagtggaaaaagtagtcccca |
274 |
Q |
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| T |
8731240 |
atggcttgaagtgtccctctatactttttgaagaaactcttgcagttagtgaagaagaggtgaaattcgaaaagcagagcagtagaacaattagacccca |
8731339 |
T |
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| Q |
275 |
aaagaagatggatcccaaga |
294 |
Q |
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| T |
8731340 |
aaagaagatggatcccaaga |
8731359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 112
Target Start/End: Original strand, 8705537 - 8705625
Alignment:
| Q |
24 |
tcatcaataatattgattttctttcgtcaagtgtgatttctttgattaatcaggtgaggtatcatactatattttaaagaatgaatttg |
112 |
Q |
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| T |
8705537 |
tcatcagtaatgttgatcttctgtcttcgagtgtgatttctttgattaaacaggtgaggtaccacattatatcttaagtaatgaatttg |
8705625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0881 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0881
Description:
Target: scaffold0881; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 294
Target Start/End: Complemental strand, 2808 - 2689
Alignment:
| Q |
175 |
atggcttgaagggtcactctatactttttgaagaaagtcatgcaatcagtgaagaagaggtgaaattcgaaaagcggagcagtggaaaaagtagtcccca |
274 |
Q |
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| T |
2808 |
atggcttgattggtcactctatactttttaaggcaactcgtggaattggggaagaagaggtgaaattcgaaaagcggataagtagaaaaagtaaacccca |
2709 |
T |
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| Q |
275 |
aaagaagatggatcccaaga |
294 |
Q |
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| T |
2708 |
aaagaagagggatcccaaga |
2689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0634 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0634
Description:
Target: scaffold0634; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 2270 - 2221
Alignment:
| Q |
306 |
gatttttaatgtttcttgattcct--gtatcaatttttggatgatgatgt |
353 |
Q |
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| T |
2270 |
gatttttaatgtttcttcattcctatgtatcaaattttggatgatgatgt |
2221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 11846759 - 11846710
Alignment:
| Q |
304 |
gggatttttaatgtttcttgattcc--tgtatcaatttttggatgatgat |
351 |
Q |
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| T |
11846759 |
gggatttttaatgtttcttcattcctatgtatcaaattttggatgatgat |
11846710 |
T |
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