View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21695_high_6 (Length: 360)
Name: NF21695_high_6
Description: NF21695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21695_high_6 |
 | |
|
| [»] scaffold0631 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0631 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: scaffold0631
Description:
Target: scaffold0631; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 8054 - 7725
Alignment:
| Q |
1 |
acaatcgtatacattggtgtcccaatgtacgatacaatgaatggccgttttccaagagttggatgcaaaagttcaagagttatc-gcctactatatattc |
99 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
8054 |
acaatcgtatacattgatgtcccaattatcaattcattgaatggccgttttccaagagttggatgcaaaagttcaagagttgtcagcctactatatattt |
7955 |
T |
|
| Q |
100 |
atccattcggagtttttgatgctccttcatcccttgctattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaata |
199 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7954 |
atccattcagagtttctgatgctccttcatcccttgctattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaata |
7855 |
T |
|
| Q |
200 |
ggtaattctccaaagtctgaaacttttttattcatgatttctac--nnnnnnnnaatgcaatgatccaaataatgatcttannnnnnnaaatgtttgcag |
297 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7854 |
ggtaattctccaaagtgtgaaaaaaaattattcatgatttctacttttttttttattgcaatgatccaaataatgatctgatttttttaaatgtttgcag |
7755 |
T |
|
| Q |
298 |
caccagtgtatcccaatcccactactgata |
327 |
Q |
| |
|
|||| ||||||||||||| |||||||||| |
|
|
| T |
7754 |
caccgttgtatcccaatccaactactgata |
7725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15386253 - 15386010
Alignment:
| Q |
1 |
acaatcgtatacattggtgtcccaatgtacgatacaatgaatggccgttttccaagagttggatgcaaaagttcaagagttatc-gcctactatatattc |
99 |
Q |
| |
|
|||||| ||||||||| ||||||||| | || || |||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
15386253 |
acaatcatatacattgatgtcccaattatcaattcattgaatggccgttttccaagaattggatgcaaaagttcaagagttgtcagcctactatatattc |
15386154 |
T |
|
| Q |
100 |
atccattcggagtttttgatgctccttcatcccttgctattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaata |
199 |
Q |
| |
|
|||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
15386153 |
atccattcagagtttctgatgctacttcatcccttgctattgcggattcatggcgcaccaacataacatccaaactatgctttcatatcaaatgttaata |
15386054 |
T |
|
| Q |
200 |
ggtaattctccaaagtctgaaacttttttattcatgatttctac |
243 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15386053 |
ggtaattctccaaagtctgaaactttattattcatgatttctac |
15386010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 38897253 - 38897010
Alignment:
| Q |
1 |
acaatcgtatacattggtgtcccaatgtacgatacaatgaatggccgttttccaagagttggatgcaaaagttcaagagttatc-gcctactatatattc |
99 |
Q |
| |
|
|||||||||||||||| ||||||||| | || || |||||||||||||||||||||||| ||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
38897253 |
acaatcgtatacattgatgtcccaattatcaattcattgaatggccgttttccaagagttgtatgcaaaggttcaagagttgtcagcctactatatattc |
38897154 |
T |
|
| Q |
100 |
atccattcggagtttttgatgctccttcatcccttgctattgcggattcatggcgcaccaacataacatccaagctatgctttcatatcaaatgttaata |
199 |
Q |
| |
|
|| ||||| |||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38897153 |
attcattcagagtttccgatgctccttcatcccttgctgttgcggattcatggagcaccaacataacatccaagctatgctttcatatcaaatgttaata |
38897054 |
T |
|
| Q |
200 |
ggtaattctccaaagtctgaaacttttttattcatgatttctac |
243 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38897053 |
ggtaactctccaaagtctgaaacttttttattcataatttctac |
38897010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 66 - 241
Target Start/End: Original strand, 24324049 - 24324225
Alignment:
| Q |
66 |
caaaagttcaagagttatc-gcctactatatattcatccattcggagtttttgatgctccttcatcccttgctattgcggattcatggcgcaccaacata |
164 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24324049 |
caaaagttcaagagttgtcagcctactatatactcatacattctgagtttctgatgctccttcatcccttgctattgcggattcatggcgcaccaacata |
24324148 |
T |
|
| Q |
165 |
acatccaagctatgctttcatatcaaatgttaataggtaattctccaaagtctgaaacttttttattcatgatttct |
241 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
24324149 |
acgtccaagctatgctttcatatcaaatgttaataggtaattctccaaattttgtaacttttttattcatgatttct |
24324225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University