View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21695_high_7 (Length: 357)

Name: NF21695_high_7
Description: NF21695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21695_high_7
NF21695_high_7
[»] chr4 (9 HSPs)
chr4 (55-337)||(25201464-25201744)
chr4 (133-335)||(13957478-13957681)
chr4 (58-327)||(51758632-51758901)
chr4 (133-335)||(42511386-42511586)
chr4 (170-335)||(10142410-10142576)
chr4 (253-335)||(14192065-14192147)
chr4 (159-335)||(51337817-51337997)
chr4 (201-335)||(28143196-28143333)
chr4 (56-294)||(20151992-20152231)
[»] chr7 (13 HSPs)
chr7 (55-335)||(39038311-39038589)
chr7 (56-335)||(43178647-43178923)
chr7 (179-335)||(24441706-24441864)
chr7 (201-335)||(6195668-6195805)
chr7 (159-335)||(6189152-6189332)
chr7 (253-335)||(19311691-19311773)
chr7 (159-335)||(48636868-48637048)
chr7 (253-335)||(8069846-8069928)
chr7 (109-318)||(23305442-23305648)
chr7 (259-318)||(8113566-8113625)
chr7 (133-269)||(8113640-8113778)
chr7 (159-335)||(48238625-48238804)
chr7 (170-243)||(14573995-14574068)
[»] chr8 (12 HSPs)
chr8 (56-335)||(11648157-11648435)
chr8 (55-335)||(960728-961008)
chr8 (181-287)||(35824166-35824273)
chr8 (231-335)||(602175-602280)
chr8 (177-335)||(11994463-11994623)
chr8 (133-251)||(9381946-9382062)
chr8 (183-265)||(32073462-32073545)
chr8 (253-335)||(2878957-2879039)
chr8 (76-243)||(24683070-24683231)
chr8 (253-335)||(6927306-6927388)
chr8 (253-335)||(28509524-28509606)
chr8 (253-335)||(28516731-28516813)
[»] chr6 (7 HSPs)
chr6 (55-317)||(1830844-1831104)
chr6 (133-335)||(11680517-11680720)
chr6 (169-329)||(14677914-14678076)
chr6 (253-335)||(33516375-33516457)
chr6 (169-335)||(4064985-4065150)
chr6 (179-294)||(14679000-14679116)
chr6 (274-327)||(1831137-1831190)
[»] chr5 (8 HSPs)
chr5 (55-329)||(5120580-5120856)
chr5 (133-335)||(43171066-43171267)
chr5 (55-215)||(23318168-23318327)
chr5 (169-322)||(26402144-26402295)
chr5 (169-335)||(14651489-14651656)
chr5 (159-335)||(7850480-7850660)
chr5 (253-335)||(38491310-38491392)
chr5 (55-130)||(33922247-33922322)
[»] chr1 (12 HSPs)
chr1 (55-215)||(12783770-12783929)
chr1 (69-286)||(47397224-47397437)
chr1 (181-329)||(12028035-12028183)
chr1 (181-318)||(5208454-5208592)
chr1 (217-335)||(48646236-48646355)
chr1 (159-335)||(36296868-36297048)
chr1 (159-335)||(42722403-42722583)
chr1 (201-335)||(28945560-28945697)
chr1 (253-335)||(26221954-26222036)
chr1 (252-322)||(49228403-49228473)
chr1 (217-322)||(35501355-35501460)
chr1 (204-251)||(12783628-12783675)
[»] chr3 (6 HSPs)
chr3 (133-327)||(47185206-47185401)
chr3 (253-335)||(6024505-6024587)
chr3 (159-335)||(23044645-23044825)
chr3 (201-335)||(31884705-31884842)
chr3 (199-252)||(44879476-44879529)
chr3 (259-335)||(44879802-44879878)
[»] chr2 (17 HSPs)
chr2 (133-335)||(25621679-25621882)
chr2 (133-318)||(14904265-14904451)
chr2 (55-224)||(6883446-6883607)
chr2 (55-163)||(25415782-25415890)
chr2 (133-322)||(38422322-38422512)
chr2 (169-335)||(90080-90248)
chr2 (114-282)||(43672737-43672906)
chr2 (253-335)||(2565866-2565948)
chr2 (253-335)||(18780924-18781006)
chr2 (201-335)||(19678245-19678382)
chr2 (253-335)||(6271355-6271437)
chr2 (159-335)||(29303342-29303522)
chr2 (253-335)||(45277251-45277333)
chr2 (63-155)||(10023326-10023418)
chr2 (253-335)||(7880108-7880190)
chr2 (249-318)||(25415498-25415567)
chr2 (272-335)||(6883603-6883666)
[»] scaffold0385 (1 HSPs)
scaffold0385 (216-332)||(903-1020)
[»] scaffold0178 (1 HSPs)
scaffold0178 (133-222)||(1015-1104)
[»] scaffold0743 (1 HSPs)
scaffold0743 (257-335)||(2557-2635)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 55 - 337
Target Start/End: Original strand, 25201464 - 25201744
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    ||||||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  25201464 ttattgatataagttatcaagtgtgctaaaattcat---agaaagtacacttttaacaacagtctaatattgattttttatcatcataatggacttgtta 25201560  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 253  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  25201561 gaaatacttatggtatataaagagaggaatgatgtacttcttacatacaaaggagttcttgcatttatgatttctctaaaaagtctaacactaattttgt 25201660  T
Q  254 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 337  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25201661 atcaaatattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgatgt 25201744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 133 - 335
Target Start/End: Original strand, 13957478 - 13957681
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||||||||||||||||||||| |||||||| | ||||||| ||||||||||||||||||||| ||||||| || |||||| ||||||||||| ||||    
T  13957478 tatcatcataatgaacttgttagagatacttatagcatataaaaagaggaatgatgtacttctagtatacaaatgacttcttgtatctatgatttatcta 13957577  T
Q  233 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 331  Q
    |||| |||||| |||| ||||||||| |||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||||||     
T  13957578 aaaactctaacactaattttgtatcatgtattatcattgttatgagtttaacattgaagaattttgcatccaaaagtttaaaatttagttaattacgtgt 13957677  T
Q  332 tgat 335  Q
    ||||    
T  13957678 tgat 13957681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 58 - 327
Target Start/End: Original strand, 51758632 - 51758901
Alignment:
Q  58 ttgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaa 157  Q
    ||||| |||||||||||||||||||||||||| ||| ||| |||||| |||||| |  |||||| ||||||||| ||||||| |||| ||||||||| |     
T  51758632 ttgatgtaagttattaagtgtgctaaaattcaccattgaaggtacacctttaacta--gtctaacattaattttgtatcatcgtaataaacttgttaaag 51758729  T
Q  158 atacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatc 256  Q
    ||||||||   ||||||| || ||||||||||||||| |||| ||||||||||||||| ||||  |||| |||||||||||||||| |||| ||||||||    
T  51758730 atacttatatcatataaaaagcggaatgatgtacttcaagcaaacaaaggagttcttgtatcttagattactctaaaaagtctaacactaattttgtatc 51758829  T
Q  257 aagtattattgttgttatgag-tttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 327  Q
    | ||||||||||||||||||| ||||||||||  || ||||  ||| ||||||||||| |||||||| ||||    
T  51758830 atgtattattgttgttatgagttttaacattgccgacttttccatccaaaagtttaaattttaattaattac 51758901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 335
Target Start/End: Complemental strand, 42511586 - 42511386
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||| ||||||||||||||||| |||||| |   ||||||| ||||||||||||||||||||| ||||||| |||||||||  |||||||||  ||||    
T  42511586 tatcattataatgaacttgttagagatacttctaacatataaaaagaggaatgatgtacttctagtatacaaaagagttcttgtgtctatgattcttcta 42511487  T
Q  233 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 331  Q
    |||||  |||| |||| ||||||||| ||||||||||||||||||||||||||||| |||| |||| |||||| ||||||||||||| ||| |||||||     
T  42511486 aaaag--taacactaattttgtatcatgtattattgttgttatgagtttaacattggagaa-tttgcatctaagagtttaaaatttagttaattacgtgc 42511390  T
Q  332 tgat 335  Q
    ||||    
T  42511389 tgat 42511386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 335
Target Start/End: Original strand, 10142410 - 10142576
Alignment:
Q  170 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgt 268  Q
    |||||| |||||||| |||||| ||||| |||||||||||||| || |||||||||| || ||||||||||||| ||||||| |||||| ||||||||||    
T  10142410 tataaaaagaggaatcatgtacatctagtatacaaaggagttcatgtatctatgattcctttaaaaagtctaacactaattttgtatcatgtattattgt 10142509  T
Q  269 tgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||| |||||||||||| ||||||||| ||  |||||||||||||||| ||| ||||||| ||||    
T  10142510 tgttattagtttaacattggagaattttgcattcaaaagtttaaaatttagttaattacgtgttgat 10142576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 14192147 - 14192065
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  14192147 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 14192065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 51337817 - 51337997
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  51337817 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 51337916  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  51337917 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 51337997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 28143333 - 28143196
Alignment:
Q  201 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 297  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28143333 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28143234  T
Q  298 tatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||| ||| || ||||||||||||  ||||||| ||||    
T  28143233 tatccaaatgtctaaaatttaattgattacgtgttgat 28143196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 56 - 294
Target Start/End: Complemental strand, 20152231 - 20151992
Alignment:
Q  56 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 155  Q
    ||||||||||||| | |||||||||| |||||| |||| | |   | ||| ||||||||| ||||| | | || || ||| |||| ||| |||||| |||    
T  20152231 tattgatataagtgagtaagtgtgcttaaattcctcattggagacatactattaacaacattctaacactcatattatataatcaaaataaacttgatag 20152132  T
Q  156 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac-tctaatttgta 254  Q
    | |||||| |   ||||||| ||| ||||||| ||||| || | || |||||||||||||||| | | ||| ||||||||||| |||| |    ||||||    
T  20152131 agatacttgtaacatataaaaagatgaatgatatacttgtaacttataaaggagttcttgcattttttattcctctaaaaagtttaacattggttttgta 20152032  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaatt 294  Q
    |||| |||| ||||||||||| |||||| |||| ||||||    
T  20152031 tcaactattgttgttgttatgggtttaatattggagaatt 20151992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 5e-75; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 55 - 335
Target Start/End: Complemental strand, 39038589 - 39038311
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    |||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||| || || ||| ||||| |||||||||||| |||||||||    
T  39038589 ttattgatataaattattaagtgtgctaaaattcatcattgaaggtacacttttaacaacaatccaacattgattttgtatcatcataataaacttgtta 39038490  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 253  Q
    || ||||||||   ||||||| ||||||||||||||||||||||||||||||||||| ||  || || |||| |||||||||||||||| |||| |||||    
T  39038489 gagatacttataacatataaaaagaggaatgatgtacttctagcatacaaaggagtttttctatatacgattcctctaaaaagtctaacactaattttgt 39038390  T
Q  254 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||| |||||||||||||||||||||||||||||  ||  |||  ||| |||||||||||||||||||| ||||||| ||||    
T  39038389 atcatgtattattgttgttatgagtttaacattg-gga--tttccatccaaaagtttaaaatttaattaattacgtgttgat 39038311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 56 - 335
Target Start/End: Complemental strand, 43178923 - 43178647
Alignment:
Q  56 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 155  Q
    |||||||||||||||||||||||| ||||||| | ||| ||| |||||| |||||||| ||||||| ||| ||||| ||||||||||||||| ||| |||    
T  43178923 tattgatataagttattaagtgtgttaaaattaaccattgaaggtacacatttaacaatagtctaacattgattttgtatcatcataatgaatttggtag 43178824  T
Q  156 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 254  Q
    | ||||||||   ||||||| |||| |||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||||| |||| ||||||    
T  43178823 agatacttatatcatataaaaagagaaatgatgtacttctagcatacaaaggagttcttgtatttgtgattcctctaaaaagtctaacactaattttgta 43178724  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    | | ||||||   |||||||||||||||||||| ||| |||| |||| |||||||||||||||||||| ||||||| ||||    
T  43178723 t-atgtatta---ttgttatgagtttaacattggagatttttttatccaaaagtttaaaatttaattaattacgtgttgat 43178647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 179 - 335
Target Start/End: Complemental strand, 24441864 - 24441706
Alignment:
Q  179 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgag 277  Q
    ||||||||| ||||||||| |||||||||||||||||  ||||||||| ||||||||||| ||||  ||| ||||||||| |||||||||||||| ||||    
T  24441864 aggaatgatatacttctagtatacaaaggagttcttgtgtctatgattcctctaaaaagtttaacaataattttgtatcatgtattattgttgttttgag 24441765  T
Q  278 ttt-aacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||| ||||||||||||||||| ||| |||||||||||||||| ||| ||||||| ||||    
T  24441764 tttaaacattgaagaattttgcatccaaaagtttaaaatttatttaattacgtgttgat 24441706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 6195805 - 6195668
Alignment:
Q  201 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 297  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  6195805 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 6195706  T
Q  298 tatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||| ||| |||||||||||||||| ||||||| ||||    
T  6195705 tatccaaatgtttaaaatttaattaattacgtgttgat 6195668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Complemental strand, 6189332 - 6189152
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  6189332 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 6189233  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6189232 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtataaaatttaattaattacgtgttgat 6189152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 19311773 - 19311691
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  19311773 tatcaagtattattgttgttatgggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 19311691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 48636868 - 48637048
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48636868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48636967  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  48636968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 48637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 8069846 - 8069928
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  8069846 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 8069928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 109 - 318
Target Start/End: Original strand, 23305442 - 23305648
Alignment:
Q  109 aacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagga 208  Q
    ||||||||||||| ||| ||||| || |||| ||||||||||| ||      ||| | | |||| || |||||||| || ||||||||||||||||| ||    
T  23305442 aacaacagtctaacattgattttgtaacatcgtaatgaacttggta------cttgtagcatattaaaagaggaataatctacttctagcatacaaatga 23305535  T
Q  209 gttcttgcatctatgatttctctaaaaagtctaactctaatttg-tatc--aagtattattgttgttatgagtttaacattgaagaattttgtatctaaa 305  Q
    ||||| | ||||  |||| ||| ||||||||||||  | ||||  ||||  |||||||||||| |||||| ||||||||||| | ||||||||||| |||    
T  23305536 gttctcgtatcttagattcctcaaaaaagtctaaccttgattttctatcgcaagtattattgtagttatgggtttaacattggataattttgtatccaaa 23305635  T
Q  306 agtttaaaattta 318  Q
    ||| |||||||||    
T  23305636 agtctaaaattta 23305648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 318
Target Start/End: Complemental strand, 8113625 - 8113566
Alignment:
Q  259 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 318  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||    
T  8113625 gtattattgttgttatgagtttaacattggagaattttgcatccaaaagtttaaaattta 8113566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 8113778 - 8113640
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctct- 231  Q
    |||||||||||||||||||||||| |||  |||   |||||||   | ||||||||||||||||  ||||||||||  ||||| ||| |||||| ||||     
T  8113778 tatcatcataatgaacttgttagagatatctataacatataaaagtaagaatgatgtacttctactatacaaaggaactcttgtatcgatgattcctcta 8113679  T
Q  232 aaaaagtctaactctaa-tttgtatcaagtattattgtt 269  Q
    |||||||||||| |||| ||||||||| |||||||||||    
T  8113678 aaaaagtctaacactaattttgtatcatgtattattgtt 8113640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 48238625 - 48238804
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  48238625 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 48238724  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||  ||| || ||||||||||||| ||||||| ||||    
T  48238725 tcaagtattattgttgttatgtgtt-aacattggagaattttgtattcaaatgtctaaaatttaattaattacgtgttgat 48238804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 14573995 - 14574068
Alignment:
Q  170 tataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 243  Q
    |||||| ||| ||||||||||||| || | || |||||||||||||| ||| ||||| |||| |||||||||||    
T  14573995 tataaaaagaagaatgatgtacttgtaacgtataaaggagttcttgcctctttgattcctctgaaaagtctaac 14574068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 56 - 335
Target Start/End: Complemental strand, 11648435 - 11648157
Alignment:
Q  56 tattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 155  Q
    |||| ||||||||||||||||||||| |||| || ||| |||  ||||| |||||||| ||||||| ||||||||| |||||| ||||||||||||||||    
T  11648435 tattaatataagttattaagtgtgcttaaatacaccattgaagttacacatttaacaatagtctaacattaattttgtatcattataatgaacttgttag 11648336  T
Q  156 aaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgta 254  Q
    | |||||||| || |||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||| ||||||| |||| ||| |||| ||||||    
T  11648335 agatacttatagtttataaaaagaggaatgatgtatttctagcatacaaaggagttattgtatctatgattcctctaaagagtcaaacactaattttgta 11648236  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||  | |||||||||||||||||||||||||| || |||||  ||| |||||||||||||||||||| ||| ||| ||||    
T  11648235 tca--tgttattgttgttatgagtttaacattggagtatttttcatccaaaagtttaaaatttaattaattatgtgttgat 11648157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 335
Target Start/End: Complemental strand, 961008 - 960728
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    ||||||||||||||||||||||||||||||||| | ||| ||| | ||||||||||||||| || || ||||||||| ||||||||||||||||||||||    
T  961008 ttattgatataagttattaagtgtgctaaaattgaccattgaaggcacacttttaacaacaatccaacattaattttgtatcatcataatgaacttgtta 960909  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaag-tctaactctaattt-g 252  Q
    |  ||  ||||   ||||||| |||||||||||  |||| ||||||||||| ||||||||| |||||||||| |||||||||  ||||||  |||||| |    
T  960908 gctatgtttataacatataaaaagaggaatgat--acttatagcatacaaatgagttcttgtatctatgattcctctaaaaaaatctaacattaattttg 960811  T
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
     | || ||||| ||||||| ||||||||||||||  ||||||||| ||| ||||||||||| |||||||| ||||||| ||||    
T  960810 caccatgtattcttgttgtgatgagtttaacattagagaattttgcatcaaaaagtttaaattttaattaattacgtgttgat 960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 287
Target Start/End: Original strand, 35824166 - 35824273
Alignment:
Q  181 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 279  Q
    ||||||||||||||| | |||||||||| |||||  |||||||||| ||||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  35824166 gaatgatgtacttctggtatacaaaggatttcttttatctatgattcctctaaaaagtttaacactaattttgtatcatgtattattgttgttatgagtt 35824265  T
Q  280 taacattg 287  Q
    ||||||||    
T  35824266 taacattg 35824273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 231 - 335
Target Start/End: Complemental strand, 602280 - 602175
Alignment:
Q  231 taaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 329  Q
    ||||||||||||| ||||||| || ||| ||||||||||||||||||||||||||||  ||||||||  ||| |||||||||||||||||||| ||||||    
T  602280 taaaaagtctaacactaattttgtgtcatgtattattgttgttatgagtttaacattttagaattttccatccaaaagtttaaaatttaattaattacgt 602181  T
Q  330 gatgat 335  Q
    | ||||    
T  602180 gttgat 602175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 177 - 335
Target Start/End: Complemental strand, 11994623 - 11994463
Alignment:
Q  177 agaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattattgttgttat 274  Q
    ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||||||||||    
T  11994623 agaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattttaacacatttttttttatcaagtattattgttgttat 11994524  T
Q  275 gagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    | ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  11994523 gggtttaacattggagaattttgtatcaaaatgtctaaaatttaattaattacgtgttgat 11994463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 9382062 - 9381946
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||||||||||||||||||||   ||| | | | ||||||| | | ||||||||||||||||  ||||||| ||||||||| |||||||||| |||||    
T  9382062 tatcatcataatgaacttgttagc--tacctgtagcatataaaaataagaatgatgtacttctaatatacaaaagagttcttgtatctatgattcctcta 9381965  T
Q  233 aaaagtctaactctaattt 251  Q
    ||||||||||| |||||||    
T  9381964 aaaagtctaacactaattt 9381946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 183 - 265
Target Start/End: Original strand, 32073462 - 32073545
Alignment:
Q  183 atgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattat 265  Q
    ||||||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| ||||||||  |||||||    
T  32073462 atgatgtacttctagcatacaaatgagtttttgtatctatgattcctctaaaaagtctaactctaactttgtatcttgtattat 32073545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 2879039 - 2878957
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2879039 tatcaagtattattgttgttatgagtttaatattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2878957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 76 - 243
Target Start/End: Original strand, 24683070 - 24683231
Alignment:
Q  76 tgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaa 175  Q
    |||||||||||||| ||| | | ||||||  ||||||||||||||| ||| ||||| ||| |||||||| |||||| ||       || | | |||||||    
T  24683070 tgtgctaaaattcaccattggaggtacacagttaacaacagtctaacattgattttgtattatcataataaacttggtat------ttgtagcatataaa 24683163  T
Q  176 gagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaac 243  Q
     ||||||||||| ||||| ||||||||||| ||||||||| ||||  |||| ||||||||||||||||    
T  24683164 aagaggaatgatttacttgtagcatacaaatgagttcttgtatcttagattactctaaaaagtctaac 24683231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 6927388 - 6927306
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6927388 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6927306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 28509524 - 28509606
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28509524 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28509606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 28516731 - 28516813
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  28516731 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 28516813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 55 - 317
Target Start/End: Original strand, 1830844 - 1831104
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    |||||||||||||||||||||||| |||||||| | ||| |||||||||| |||||||| ||| ||| ||| ||||| ||||||||||||||||||| ||    
T  1830844 ttattgatataagttattaagtgtcctaaaattaaccattgaaagtacacatttaacaatagtataacattgattttgtatcatcataatgaacttgcta 1830943  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgt 253  Q
    |||||||||||   ||||||| ||| |||||||| |||||||||||||||||||| ||||| ||   ||||| |||||||||||||||  |||| |||||    
T  1830944 gaaatacttataacatataaaaagatgaatgatgcacttctagcatacaaaggagctcttgtattattgattactctaaaaagtctaaaactaattttgt 1831043  T
Q  254 atcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattt 317  Q
    |||| ||||||   ||||||| |||||||||||| ||||||||  ||| |||||||||||||||    
T  1831044 atcatgtatta---ttgttataagtttaacattggagaattttccatccaaaagtttaaaattt 1831104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 133 - 335
Target Start/End: Complemental strand, 11680720 - 11680517
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||||||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||| |||  | ||||||  |   |||| |||| ||| |    
T  11680720 tatcatcataatgaacttgttagagatacttatagcatataaaaagagtaatgatgtacttctagtatattatggagttactctgtctaagattcctcaa 11680621  T
Q  233 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 331  Q
    |||||||||||  |||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||| |||||||     
T  11680620 aaaagtctaacaataattttgtatcaagtattattgttgttaggagtttaacattggagaattttgcatctaaaactttaaaatttagttaattacgtgt 11680521  T
Q  332 tgat 335  Q
    ||||    
T  11680520 tgat 11680517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 169 - 329
Target Start/End: Original strand, 14677914 - 14678076
Alignment:
Q  169 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 266  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| |||||| |  |  ||| ||||||||||||||    
T  14677914 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaattctaacacatttttttttatcaagtattatt 14678013  T
Q  267 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 329  Q
    ||||||||| ||||||||||| ||||||||||||| ||| || ||||||||||||| ||||||    
T  14678014 gttgttatgggtttaacattggagaattttgtatccaaatgtctaaaatttaattaattacgt 14678076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 33516457 - 33516375
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  33516457 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 33516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 335
Target Start/End: Complemental strand, 4065150 - 4064985
Alignment:
Q  169 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattg 267  Q
    |||||||  |||||||||||| ||| || |||| ||||||||||||| |||| || || |||||||||||  ||| ||  ||| ||||||||||| ||||    
T  4065150 atataaaatgaggaatgatgttcttgtaacatataaaggagttcttgtatctttggttcctctaaaaagt--aacgctggttttgtatcaagtataattg 4065053  T
Q  268 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||| |||| |||||| |||| |||||| || ||| |||||  ||||||||||||| ||| ||| ||||    
T  4065052 ttgctatgggtttaatattggagaattatgcatccaaaaggctaaaatttaattaattaagtgttgat 4064985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 179 - 294
Target Start/End: Complemental strand, 14679116 - 14679000
Alignment:
Q  179 aggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgag 277  Q
    |||||||||| |||| || |||| ||| ||| | |||||||| |||||  |||||||| | |||| ||| ||| |||||||||||||||||| | ||| |    
T  14679116 aggaatgatgcacttgtaacatataaatgagattttgcatctctgattcttctaaaaaatttaacactagttttgtatcaagtattattgttatcatgcg 14679017  T
Q  278 tttaacattgaagaatt 294  Q
    ||||| |||||||||||    
T  14679016 tttaatattgaagaatt 14679000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Original strand, 1831137 - 1831190
Alignment:
Q  274 tgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 327  Q
    |||||||||||||| ||||||||  ||| ||||||||||||| |||||| ||||    
T  1831137 tgagtttaacattggagaattttcgatccaaaagtttaaaatataattaattac 1831190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 4e-60; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 55 - 329
Target Start/End: Complemental strand, 5120856 - 5120580
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    |||||||||||| |||| |||||||||||||||||   | ||| ||||||||||||||||||| ||| ||| || || |||||| |||||||||||||||    
T  5120856 ttattgatataaattatcaagtgtgctaaaattcacatttgaaggtacacttttaacaacagtttaacattgatattctatcattataatgaacttgtta 5120757  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaagg---agttcttgcatctatgatttctctaaaaagtctaactctaa-tt 250  Q
    || ||||||||   ||||||| ||||||||| ||||||||||||||||||| |   |||||||| |||||||||| || |||||| |||||| |||| ||    
T  5120756 gagatacttatatcatataaaaagaggaatggtgtacttctagcatacaaatgatcagttcttgtatctatgattcctttaaaaactctaacactaattt 5120657  T
Q  251 tgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 329  Q
    ||||||| |||||||||||||||| ||  |||||||| ||||||||  ||| |||||||||||||||||||| ||||||    
T  5120656 tgtatcatgtattattgttgttataag--taacattggagaatttttcatccaaaagtttaaaatttaattaattacgt 5120580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 133 - 335
Target Start/End: Complemental strand, 43171267 - 43171066
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    ||||||||||||||||||  |||| |||| |||   ||||||| | |||||||||||||||||||  |||||||||||||||| || ||||||| |||||    
T  43171267 tatcatcataatgaactt--tagagatacctataacatataaaaaaaggaatgatgtacttctagtgtacaaaggagttcttgtatttatgattcctcta 43171170  T
Q  233 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 331  Q
     |||||||||| ||||||| |||| | |||||||| |||||| ||||||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||     
T  43171169 caaagtctaacactaattttgtattatgtattatttttgttacgagtttaacattggagaattttgcatccaaaagtttaaaatttagttaattacgtgt 43171070  T
Q  332 tgat 335  Q
    ||||    
T  43171069 tgat 43171066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 23318327 - 23318168
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    ||||||||||||||||||||||||| |||| |||| ||| ||| |||||||||||||||||   ||| ||| ||||| ||| ||||||||||||||||||    
T  23318327 ttattgatataagttattaagtgtgataaatttcaccattgaatgtacacttttaacaacaacataacattgattttgtataatcataatgaacttgtta 23318228  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 215  Q
     | |||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||||    
T  23318227 aagatacttatagtatataaaaagaggaatgatgtacttctaacatac-aaggagttcttg 23318168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 169 - 322
Target Start/End: Original strand, 26402144 - 26402295
Alignment:
Q  169 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaat-ttgtatcaagtattattg 267  Q
    ||||||| ||| ||||||| ||||||||| ||||||||||||||||| | |||||||||||||||||||| |||| ||||| |||||||| ||||||||     
T  26402144 atataaaaagaagaatgatatacttctagaatacaaaggagttcttgtacctatgatttctctaaaaagtgtaacactaatgttgtatcatgtattatta 26402243  T
Q  268 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 322  Q
     |   |||||||||| |||| ||||||||  ||| ||||||||||||||||||||    
T  26402244 gt---atgagtttaaaattggagaattttccatccaaaagtttaaaatttaatta 26402295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 169 - 335
Target Start/End: Complemental strand, 14651656 - 14651489
Alignment:
Q  169 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc-taatttgtatcaagtattattg 267  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| | |  ||| |||||||||||||||    
T  14651656 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacattttttttatcaagtattattg 14651557  T
Q  268 ttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  14651556 ttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 14651489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 7850480 - 7850660
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  7850480 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 7850579  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  7850580 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 7850660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 38491310 - 38491392
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  38491310 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 38491392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 33922322 - 33922247
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattt 130  Q
    ||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||| |||||| ||| ||| ||||    
T  33922322 ttattgacataagtgattaagtgtgctaaaattcatcattgaaggtacacttttaataacagtttaaaattgattt 33922247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 55 - 215
Target Start/End: Complemental strand, 12783929 - 12783770
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    ||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  12783929 ttattgataaaagttattaagtgtgttaaaattcatcattgaaggtacacttttaacaacagtctaacattgattttgtatcatcataatgaacttgtta 12783830  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttg 215  Q
    || |||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||    
T  12783829 gagatacttatagcatataaaaagaggaatgatgtacttctaggatac-aaggagttcttg 12783770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 69 - 286
Target Start/End: Complemental strand, 47397437 - 47397224
Alignment:
Q  69 tattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggt 168  Q
    ||||||||||||||||||| | ||| ||| |||||||||||||||| |||||| ||| ||||| ||||||     ||||||||||||| |||||||| |     
T  47397437 tattaagtgtgctaaaatttaccattgaaggtacacttttaacaaccgtctaacattgattttgtatcat-----tgaacttgttagagatacttatagc 47397343  T
Q  169 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattg 267  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| ||| || ||||||| ||||||||||| |||  |||| ||||||||| ||||| |||    
T  47397342 atataaagagaggaatgatgtccttctagcatataaaggagttattgtatttatgattcctctaaaaagtgtaaaactaattttgtatcatgtatttttg 47397243  T
Q  268 ttgttatgagtttaacatt 286  Q
    |||||||||||||||||||    
T  47397242 ttgttatgagtttaacatt 47397224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 329
Target Start/End: Original strand, 12028035 - 12028183
Alignment:
Q  181 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtt 279  Q
    |||||||||| |||| | ||||||||||||||||| |||||||||| |||||||| ||||||| ||||||| |||||| |||||||||||||||||||||    
T  12028035 gaatgatgtatttcttgtatacaaaggagttcttgtatctatgattcctctaaaa-gtctaacactaattttgtatcatgtattattgttgttatgagtt 12028133  T
Q  280 taacattgaagaattttgtatctaaaagtttaaaatttaattacttacgt 329  Q
    |||||||| ||||||||| ||| |||||||||||||||| ||| ||||||    
T  12028134 taacattggagaattttgcatccaaaagtttaaaatttagttaattacgt 12028183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 318
Target Start/End: Complemental strand, 5208592 - 5208454
Alignment:
Q  181 gaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtt 279  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||||||||||||||||||||| |||| |||||||||  ||||| |||||||||| ||     
T  5208592 gaatgatgcacttctagtatacgaatgagttcttgtatctatgatttctctaaaaagtctaacactaattttgtatcatatattactgttgttatgggtc 5208493  T
Q  280 taacattgaagaattttgtatctaaaagtttaaaattta 318  Q
    |||||||| ||||||||| ||| ||||||||||||||||    
T  5208492 taacattgtagaattttgcatccaaaagtttaaaattta 5208454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 48646236 - 48646355
Alignment:
Q  217 atctatgatttctctaaaaagtctaactctaatttg-tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaat 315  Q
    ||||||| || ||||||||| |||||| |||||||  ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  48646236 atctatggttcctctaaaaattctaacactaattttatatcatgtattattgttgttatgagtttaacattgaagaattttgcatctaaatgtttaaaat 48646335  T
Q  316 ttaattacttacgtgatgat 335  Q
    ||||||| || |||| ||||    
T  48646336 ttaattaattgcgtgttgat 48646355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 36296868 - 36297048
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  36296868 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 36296967  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  36296968 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 36297048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 42722403 - 42722583
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  42722403 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 42722502  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  42722503 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 42722583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 28945697 - 28945560
Alignment:
Q  201 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 297  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  28945697 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 28945598  T
Q  298 tatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  28945597 tatccaaatgtctaaaatttaattaattacgtgttgat 28945560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 26221954 - 26222036
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  26221954 tatcaagtattattgtttttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 26222036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 49228473 - 49228403
Alignment:
Q  252 gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 322  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||  |   ||||||||||||| ||||||    
T  49228473 gtatcacgtattattgttgttatgagtttaacattggagaatttttcaatcaaaagtttaaaatgtaatta 49228403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 217 - 322
Target Start/End: Complemental strand, 35501460 - 35501355
Alignment:
Q  217 atctatgatttctctaaaaagtctaactctaatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatt 316  Q
    |||| ||||||||| |||||||||||| |   ||| |||||||||||||  |||||||| ||||||||||| |||||  |||||  |||||  |||||||    
T  35501460 atctttgatttctcgaaaaagtctaacacatttttttatcaagtattataattgttatgggtttaacattggagaatgatgtatacaaaagcctaaaatt 35501361  T
Q  317 taatta 322  Q
    ||||||    
T  35501360 taatta 35501355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 251
Target Start/End: Complemental strand, 12783675 - 12783628
Alignment:
Q  204 aaggagttcttgcatctatgatttctctaaaaagtctaactctaattt 251  Q
    |||||||||||| |||||||||| |||||||||||||| | |||||||    
T  12783675 aaggagttcttgtatctatgattcctctaaaaagtctaccactaattt 12783628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 133 - 327
Target Start/End: Original strand, 47185206 - 47185401
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||||| ||||||||||||||| |||||||| | ||||||| |||| |||||||||||| ||   |||||| ||||||||| |||||||||| |||||    
T  47185206 tatcatcacaatgaacttgttagagatacttatagcatataaaaagagaaatgatgtacttataatgtacaaaagagttcttgtatctatgattcctcta 47185305  T
Q  233 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttac 327  Q
    ||||||||||| |||| ||||||||| | ||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||||| ||| ||||    
T  47185306 aaaagtctaacactaattttgtatcatgaattattgttgttatgagtttaacattggagaattttgcatccaaatgtttaaaatttagttaattac 47185401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 6024587 - 6024505
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  6024587 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 6024505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 335
Target Start/End: Complemental strand, 23044825 - 23044645
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  23044825 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 23044726  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  23044725 tcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 23044645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 335
Target Start/End: Complemental strand, 31884842 - 31884705
Alignment:
Q  201 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 297  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  31884842 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 31884743  T
Q  298 tatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  31884742 tatccaaatgtctaaaatttaattaattacgtgttgat 31884705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 199 - 252
Target Start/End: Original strand, 44879476 - 44879529
Alignment:
Q  199 atacaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg 252  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||||    
T  44879476 atacaaaggagttcttgtatctatgattcctctaaaaagtctaacactaatttg 44879529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 259 - 335
Target Start/End: Original strand, 44879802 - 44879878
Alignment:
Q  259 gtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||| ||||||||||||||| |||| ||||||| | ||||| ||| |||||||||| ||| ||||||| ||||    
T  44879802 gtattattattgttatgagtttaatattggagaatttggcatctagaagattaaaatttagttaattacgtgttgat 44879878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 133 - 335
Target Start/End: Original strand, 25621679 - 25621882
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||| |||||||| |||||||| |||  |||   ||| ||| |||||||||||||||||| || ||||||| ||||| ||| || ||||||| |||||    
T  25621679 tatcattataatgaagttgttagagatatgtatatcatagaaaaagaggaatgatgtacttccagtatacaaatgagttattgtatttatgattcctcta 25621778  T
Q  233 aaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtga 331  Q
    ||| ||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||  || ||||||||||||||||| || |||||||     
T  25621779 aaaggtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggagaattttgcttccaaaagtttaaaatttaactaattacgtgt 25621878  T
Q  332 tgat 335  Q
    ||||    
T  25621879 tgat 25621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 133 - 318
Target Start/End: Original strand, 14904265 - 14904451
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||||||||||||||||||||| ||||||||   ||||||| |||||| |||| ||||| ||| ||| ||| ||||| |||  |||||||||  ||||    
T  14904265 tatcatcataatgaacttgttagagatacttataacatataaaaagaggagtgatatacttatagtatataaatgagttattgtttctatgattcttcta 14904364  T
Q  233 aaaagtctaactctaa-tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 318  Q
    |||| ||||||  ||| ||||||||| ||||||||||||||| ||| ||||||||| | ||||||| ||  ||||||||||||||||    
T  14904365 aaaaatctaacaataattttgtatcatgtattattgttgttaggaggttaacattggataattttgcattcaaaagtttaaaattta 14904451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 55 - 224
Target Start/End: Original strand, 6883446 - 6883607
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    |||||||||||| |||||||||||||||||     ||| |||   ||| ||||||||||| ||| || ||| ||||| ||||||||||||||||||||||    
T  6883446 ttattgatataaattattaagtgtgctaaa-----tcaaaga---tacgcttttaacaacggtcgaacattgattttatatcatcataatgaacttgtta 6883537  T
Q  155 gaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatga 224  Q
    || |||||| | | ||||||| ||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  6883538 gagatacttgtagcatataaaaagaggaatgatgtacttttagtatacaaatgagttcttgtatctatga 6883607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 25415890 - 25415782
Alignment:
Q  55 ttattgatataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgtta 154  Q
    |||||||||||| || |||||||| |||||||||||| | ||| ||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||    
T  25415890 ttattgatataaatttttaagtgtactaaaattcatctttgaaggtacacttttaacaacaatctaacattgattttgtatcatcataatgaacttgtta 25415791  T
Q  155 gaaatactt 163  Q
    || ||||||    
T  25415790 gagatactt 25415782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 133 - 322
Target Start/End: Complemental strand, 38422512 - 38422322
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctcta 232  Q
    |||||||| |||||||||| |||| |||||| | | ||||||| ||||||||||||||||| || |||| ||||||||||| | |||| |||||  ||||    
T  38422512 tatcatcacaatgaacttgatagagatacttgtagcatataaaaagaggaatgatgtacttgtaacatataaaggagttctagtatctttgattcttcta 38422413  T
Q  233 aaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaatta 322  Q
    ||||||||||| ||   ||||||||||||| |||| |||||||| |||| | |||| |||| | || ||| |||||  |||||||||||||    
T  38422412 aaaagtctaacactggttttgtatcaagtaatattattgttatgggtttgatattggagaagtctgcatccaaaaggctaaaatttaatta 38422322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 335
Target Start/End: Complemental strand, 90248 - 90080
Alignment:
Q  169 atataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctatgatttctctaaaaagtctaactc--taatttgtatcaagtattatt 266  Q
    ||||||| ||||||||||| || || ||| ||||||| ||||| ||| ||||  |||| ||||||||| | |||| |  |  ||| ||||||||||||||    
T  90248 atataaaaagaggaatgatttatttgtagtatacaaatgagttattgtatcttagattactctaaaaaatttaacacatttttttttatcaagtattatt 90149  T
Q  267 gttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||| |||||| |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  90148 gttgttatgggtttaaaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 90080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 114 - 282
Target Start/End: Complemental strand, 43672906 - 43672737
Alignment:
Q  114 cagtctaatattaattttttatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttct 213  Q
    |||||||| ||| || || |||||||| |||||| ||| |||||||||||   | ||||||| ||||||||||||||||| || |||| |||||||||      
T  43672906 cagtctaacattgatattgtatcatcacaatgaatttgatagaaatacttgcagcatataaaaagaggaatgatgtacttgtaacatataaaggagttac 43672807  T
Q  214 tgcatctatgatttctctaaaaagtctaactct-aatttgtatcaagtattattgttgttatgagtttaa 282  Q
     | |||| ||||| |||||||||||||||  || | ||||||||||||||||||| ||||||| ||||||    
T  43672806 ggtatctttgattcctctaaaaagtctaatactgattttgtatcaagtattattgatgttatgggtttaa 43672737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Original strand, 2565866 - 2565948
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  2565866 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 2565948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 18781006 - 18780924
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| || ||||||||||||| | ||||| ||||    
T  18781006 tatcaagtattattgttgttatgagtttaacattggagaattttgtatccaaatgtctaaaatttaattaatgacgtgttgat 18780924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 201 - 335
Target Start/End: Original strand, 19678245 - 19678382
Alignment:
Q  201 acaaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---tatcaagtattattgttgttatgagtttaacattgaagaattttg 297  Q
    ||||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||||||||||||||||||||||| ||||| ||||| |||||||||    
T  19678245 acaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgtttatcaagtattattgttgttatgtgtttagcattggagaattttg 19678344  T
Q  298 tatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||| ||| || ||||||||||||| ||||||| ||||    
T  19678345 tatccaaatgtctaaaatttaattaattacgtgttgat 19678382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 6271437 - 6271355
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||||| ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  6271437 tatcaagtattattgttgttatgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 6271355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 335
Target Start/End: Original strand, 29303342 - 29303522
Alignment:
Q  159 tacttatggtatataaagagaggaatgatgtacttctagcata-caaaggagttcttgcatctatgatttctctaaaaagtctaactctaatttg---ta 254  Q
    ||||||| | ||||||| ||| ||||||| || || ||| ||| |||| ||||| ||| ||||  |||| ||||||||| | |||| |||||||    ||    
T  29303342 tacttatagcatataaaaagatgaatgatttatttgtagtataacaaatgagttattgtatcttagattactctaaaaaatttaacactaattttgttta 29303441  T
Q  255 tcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||||| |||||  |||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  29303442 tcaagtattattgttgttatgtgtttagaattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 29303522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 45277333 - 45277251
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || ||||||||||||| ||||||| ||||    
T  45277333 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaattaattacgtgttgat 45277251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 10023326 - 10023418
Alignment:
Q  63 ataagttattaagtgtgctaaaattcatcatagaaagtacacttttaacaacagtctaatattaattttttatcatcataatgaacttgttag 155  Q
    ||||||||| ||||||||||||||||  ||| ||| |  ||||||||||| || ||||| ||| ||||| |||||||||||||||||||||||    
T  10023326 ataagttatgaagtgtgctaaaattctccattgaatgcgcacttttaacatcaatctaacattgattttgtatcatcataatgaacttgttag 10023418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 253 - 335
Target Start/End: Complemental strand, 7880190 - 7880108
Alignment:
Q  253 tatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||||||| || ||||| ||||| ||||||||||||| ||| || |||||||||| || ||||||| ||||    
T  7880190 tatcaagtattattgttgttgtgtgtttagcattggagaattttgtatccaaatgtctaaaatttaactaattacgtgttgat 7880108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 318
Target Start/End: Complemental strand, 25415567 - 25415498
Alignment:
Q  249 tttgtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaattta 318  Q
    ||||||||| ||||||||||||||||||| ||||||||  ||||||||  ||| |||| |||||||||||    
T  25415567 tttgtatcatgtattattgttgttatgagcttaacattagagaattttccatcaaaaactttaaaattta 25415498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 335
Target Start/End: Original strand, 6883603 - 6883666
Alignment:
Q  272 tatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    |||||||||||||||| |||||||| |||| |||| ||||||||||||||| ||| ||| ||||    
T  6883603 tatgagtttaacattggagaattttctatccaaaaatttaaaatttaattaattatgtgttgat 6883666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 216 - 332
Target Start/End: Original strand, 903 - 1020
Alignment:
Q  216 catctatgatttctctaaaaagtctaactctaattt-gtatcaagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaa 314  Q
    ||||||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||  |||||||| ||| || ||||||| |    
T  903 catctatgattcctctaaaaagtctaacactaattttgtatcatgtattattgttgttatgagtttaacattggtgaattttgcatccaatagtttaata 1002  T
Q  315 tttaattacttacgtgat 332  Q
    |||| ||| |||| ||||    
T  1003 tttagttaattacatgat 1020  T

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Target: scaffold0178 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 1104 - 1015
Alignment:
Q  133 tatcatcataatgaacttgttagaaatacttatggtatataaagagaggaatgatgtacttctagcatacaaaggagttcttgcatctat 222  Q
    |||||||||||||||||||||||| ||| |||| | ||||||| ||||||| ||||||||||||| ||||||| ||||||||| ||||||    
T  1104 tatcatcataatgaacttgttagagataattatagcatataaaaagaggaacgatgtacttctagtatacaaaagagttcttgtatctat 1015  T

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Target: scaffold0743 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0743
Description:

Target: scaffold0743; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 257 - 335
Target Start/End: Complemental strand, 2635 - 2557
Alignment:
Q  257 aagtattattgttgttatgagtttaacattgaagaattttgtatctaaaagtttaaaatttaattacttacgtgatgat 335  Q
    ||||||||||||||||||| ||||||||||| | ||||||||||| ||| || ||||||||||||| ||| ||| ||||    
T  2635 aagtattattgttgttatgtgtttaacattggataattttgtatccaaatgtctaaaatttaattaattatgtgttgat 2557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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