View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21695_low_1 (Length: 352)
Name: NF21695_low_1
Description: NF21695
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21695_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 35 - 344
Target Start/End: Original strand, 36192757 - 36193066
Alignment:
| Q |
35 |
tttcaaaaccaggtaggatgtaatattacatcttcaatcgcaccgcaggcttttcatttggctgctgaactaattttgcagttataactttcacaatctc |
134 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36192757 |
tttcaaaaccaagtaggatgtaatattacattttcaatcgcaccgcaggcttttcatttggctgctgaactaattttgcagttataactttcacaatctc |
36192856 |
T |
|
| Q |
135 |
catgacttcatctgaattctcagtcttcgtaacaagattgcagataatagtgaagatggactctacatctggtataacaaataacagatattgttaacac |
234 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
36192857 |
catgacttcatctggattctcagtcttcgtaacaagattgcagataatagtgaagatggactctacatctggtataacaaataacagacattgtaaacac |
36192956 |
T |
|
| Q |
235 |
tgtcacagtctgcccaaaagttcatcactcatagtatcacgccaatcaattatctgtgaaatatcaaattgggttcctaacaagaaagtgaagaacgctc |
334 |
Q |
| |
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|||||||||||||||||| ||||||||||||| ||||| |||||| |||||||||||||| |||||||||||||||| || |||| |||| ||||||| |
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| T |
36192957 |
agtcacagtctgcccaaaaattcatcactcataatatcatgccaatgaattatctgtgaaacatcaaattgggttcctcactggaaactgaaaaacgctc |
36193056 |
T |
|
| Q |
335 |
tacagaataa |
344 |
Q |
| |
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|||||||||| |
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| T |
36193057 |
tacagaataa |
36193066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 35 - 344
Target Start/End: Complemental strand, 5054735 - 5054429
Alignment:
| Q |
35 |
tttcaaaaccaggtaggatgtaatattacatcttcaatcgcaccgcaggcttttcatttggctgctgaactaattttgcagttataactttcacaatctc |
134 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5054735 |
tttcaaaaccaagtaggatgtaatattacatcttcaatcgcaccgcaggcttttcatttggctgctgaactaattttgcagttataactttcacaatctc |
5054636 |
T |
|
| Q |
135 |
catgacttcatctgaattctcagtcttcgtaacaagattgcagataatagtgaagatggactctacatctggtataacaaataacagatattgttaacac |
234 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5054635 |
catgacttcatctggattctcagtcttcgtaacaagattgcagacaatagtgaagatggactctacatctggtataacaaataacagatattgtaaaca- |
5054537 |
T |
|
| Q |
235 |
tgtcacagtctgcccaaaagttcatcactcatagtatcacgccaatcaattatctgtgaaatatcaaattgggttcctaacaagaaagtgaagaacgctc |
334 |
Q |
| |
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|||||| ||||||||||| |||||||||| || || || |||||||||||||||||| || |||||||||| |||||||| || ||||||| ||||| | |
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| T |
5054536 |
-gtcacattctgcccaaaatttcatcactcgtattaccatgccaatcaattatctgtggaacatcaaattggattcctaactag-aagtgaaaaacgcgc |
5054439 |
T |
|
| Q |
335 |
tacagaataa |
344 |
Q |
| |
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|||||||||| |
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|
| T |
5054438 |
tacagaataa |
5054429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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