View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21696_high_16 (Length: 307)
Name: NF21696_high_16
Description: NF21696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21696_high_16 |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold1395 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 43334479 - 43334184
Alignment:
| Q |
12 |
acagacaagtgaaaatgaaaatcttgacctgaggaaggtcatccagagtaatttgttaacaccaaatggaatccacagatcaaacattcatttctccaag |
111 |
Q |
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| T |
43334479 |
acagtcaagtgaaggtgaaaatcttgaccttcctcaggtccttcagagtaatttgttaacaccaaatggaatccacagatcaaacattgatttgtctaag |
43334380 |
T |
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| Q |
112 |
gtcatggaagttgttgccaaaacgtcaaacgtaactctaaaaaccaagttttcaacttactataaggctgttatgccatctggttcaatctacttcgcca |
211 |
Q |
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| T |
43334379 |
gccatggaagctgttgccgaaacgtcaaacgttactctgaaaaccaagttttcaacttactataaggctgtcatgccatctggttcaatctacttcgcca |
43334280 |
T |
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| Q |
212 |
agaagctaaattggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttggacaattcaaatg |
307 |
Q |
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| T |
43334279 |
agaagctgaactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttggacaattcaaatg |
43334184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 43338914 - 43338619
Alignment:
| Q |
12 |
acagacaagtgaaaatgaaaatcttgacctgaggaaggtcatccagagtaatttgttaacaccaaatggaatccacagatcaaacattcatttctccaag |
111 |
Q |
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| T |
43338914 |
acagtcaagtgaaggtgaaaatcttgaccttcctcaggtccttcagagtaatttgttaacaccaaatggaatccacagatcaaacattgatttgtctaag |
43338815 |
T |
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| Q |
112 |
gtcatggaagttgttgccaaaacgtcaaacgtaactctaaaaaccaagttttcaacttactataaggctgttatgccatctggttcaatctacttcgcca |
211 |
Q |
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| T |
43338814 |
gccatggaagctgttgccgaaacgtcaaacgttactctgaaaaccaagttttcaacttactataaggctgtcatgccatctggttcaatctacttcgcca |
43338715 |
T |
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| Q |
212 |
agaagctaaattggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttggacaattcaaatg |
307 |
Q |
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| T |
43338714 |
agaagctgaactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttgaacaattcaaatg |
43338619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1395 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold1395
Description:
Target: scaffold1395; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 283 - 1
Alignment:
| Q |
12 |
acagacaagtgaaaatgaaaatcttgacctgaggaaggtcatccagagtaatttgttaacaccaaatggaatccacagatcaaacattcatttctccaag |
111 |
Q |
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|||| |||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||| || ||| |
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| T |
283 |
acagtcaagtgaaggtgaaaatcttgaccttcctcaggtccttcagagtaatttgttaacaccaaatggaatccacagatcaaacattgatttttctaag |
184 |
T |
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| Q |
112 |
gtcatggaagttgttgccaaaacgtcaaacgtaactctaaaaaccaagttttcaacttactataaggctgttatgccatctggttcaatctacttcgcca |
211 |
Q |
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| T |
183 |
gtcatggaagttgttgcctaaacgtcaaacgttactcttaaaatcaagttttcaacttactataaggctgttatgccatctggttcaatctacttcgcca |
84 |
T |
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| Q |
212 |
agaagctaaattggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttg |
294 |
Q |
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| T |
83 |
agaagctgaactggtgtgacaaggtatttccagtgagtagtcttgataaatttgggaaagagctagatgcattggcaaagttg |
1 |
T |
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