View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21696_high_18 (Length: 304)
Name: NF21696_high_18
Description: NF21696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21696_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 142 - 298
Target Start/End: Complemental strand, 29487688 - 29487532
Alignment:
| Q |
142 |
cttgaagagtagagagtcaaatctaaaataaggcgaacaatcacacatcacgtgcacaattcaacgcatctgcatgcgaacacgaaactaaattatagaa |
241 |
Q |
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| T |
29487688 |
cttgaagggtagagagtcaaatccaaaataaggcgaacaatcacacgtcacgtgcacaattcaacgcatcaacatacgaacacgaaactaaattataaaa |
29487589 |
T |
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| Q |
242 |
aaagagtatcatcgtgacaaccgataaatcgtcccgtccaccacaactctctgcttc |
298 |
Q |
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| T |
29487588 |
aaagagtatcatcgtgacaaccgataaatcgacccgtccaccacaactctctgcttc |
29487532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29487829 - 29487777
Alignment:
| Q |
1 |
tattcctagaaaatttaatcccaaccataaattttgtaaccaagaaacaaata |
53 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
29487829 |
tattcctaaaaaatttaatcccgaccataaattttgtaaccaagaaacaaata |
29487777 |
T |
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