View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21696_high_1_N (Length: 451)
Name: NF21696_high_1_N
Description: NF21696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21696_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 20670867 - 20670549
Alignment:
| Q |
25 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtaggtatacgagagtaacgagggaggaggagg |
124 |
Q |
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| T |
20670867 |
gacatcatcaagggtgaaattaccggggaagttatcggtaacggtgatggttttaccggggagaagagtagggatacgagagtaacgagggaggaggagg |
20670768 |
T |
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| Q |
125 |
aggtcagtgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgagggatgaagagtg |
224 |
Q |
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| T |
20670767 |
aggtcagcgtagacgagacgttgagggatgatatgatatggaaaagtgaaggggtttaatgtagaggaagatggtaagggttgttgaggaatgaagagtg |
20670668 |
T |
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| Q |
225 |
ttaggctaagtgatggatgtgagattgataagatgcttacccatttgtttacgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
324 |
Q |
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| T |
20670667 |
ttaggctaagtgatggatgggagattgataagatgcttacccatttgtttatgcttgtgtctcctgatcctattagtgcatcaagaatgttgttcatttc |
20670568 |
T |
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| Q |
325 |
ttgcattgccaatggtgga |
343 |
Q |
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| T |
20670567 |
ttgcattgccaatggtgga |
20670549 |
T |
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