View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21696_high_6 (Length: 350)
Name: NF21696_high_6
Description: NF21696
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21696_high_6 |
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| [»] chr4 (4 HSPs) |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 350
Target Start/End: Complemental strand, 48951364 - 48951027
Alignment:
| Q |
13 |
cagatggttatattagggcatcctgctgttggcgcgtttttgacacattgtgggtggaactctgtgacggaggctattagtgtaggggttccgatgatca |
112 |
Q |
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| T |
48951364 |
cagatggttatattagggcatcctgccgttggcgcgtttttgacacattgtgggtggaactctgtgacggaggctattagtgtaggggttccgatgatca |
48951265 |
T |
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| Q |
113 |
cgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtaggtgcagatgaatggatcacaacagc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48951264 |
cgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtaggtgcagatgagtggatcacaacagc |
48951165 |
T |
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| Q |
213 |
ttttcgagatatgaaaaagttggtgaagagagattttataaagaaggctatgagaaggttgatggatgggggtgatgaagctgtccaaattagaaacaaa |
312 |
Q |
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| T |
48951164 |
ttttcgagatatgaaaaagttggtgaagagagattttataaagaaggctatgagaaggttgatggatgggggtgatgaagctgtccaaattagaaacaaa |
48951065 |
T |
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| Q |
313 |
gcccaagagttagcaaaaattgctaaagatgttgttcg |
350 |
Q |
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| T |
48951064 |
gcccaagagttagcaaaaattgctaaagatgttgttcg |
48951027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 209
Target Start/End: Original strand, 48912479 - 48912599
Alignment:
| Q |
89 |
ttagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtagg |
188 |
Q |
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| T |
48912479 |
ttagtgcaggggttccaatgatcacgtggccgatgcatggagaacagttttacaatgagaagttgataacacaggtgcatgggattggggtggaggtcgg |
48912578 |
T |
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| Q |
189 |
tgcagatgaatggatcacaac |
209 |
Q |
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|||| ||||||| |||||| |
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| T |
48912579 |
tgcaacggaatggagcacaac |
48912599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 192
Target Start/End: Complemental strand, 48958181 - 48958086
Alignment:
| Q |
97 |
ggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtaggtgca |
192 |
Q |
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| T |
48958181 |
ggggttccaatgatcacgtggccggtgcatggagaacaattctacaatgagaagttgataactaatgtgcgaggaattggggtggaggttggtgca |
48958086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 48974163 - 48974085
Alignment:
| Q |
89 |
ttagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcg |
167 |
Q |
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| T |
48974163 |
ttagtgcaggggttccaatgatcacgtggccagtgcatgacgaacaattctacaacgagaagttgataactcaggtgcg |
48974085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 49 - 349
Target Start/End: Original strand, 1547 - 1847
Alignment:
| Q |
49 |
tttttgacacattgtgggtggaactctgtgacggaggctattagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgaga |
148 |
Q |
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| T |
1547 |
tttttgacacattgtgggtggaactctataaccgaggctgttagtgcaggaattccaatgatcacatggccagtacatagtgatcaattctataacgaaa |
1646 |
T |
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| Q |
149 |
agctcataactcatgtgcgtgggataggagtggaagtaggtgcagatgaatggatcacaacagcttttcgagatatgaaaaagttggtgaagagagattt |
248 |
Q |
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| T |
1647 |
cgttgataactcaggtgcatgggattggagtggaagtcggtgcagatgagtggcttaccattgcttttcgggacatggaaaagctaatagggagagatcg |
1746 |
T |
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| Q |
249 |
tataaagaaggctatgagaaggttgatggatgggggtgatgaagctgtccaaattagaaacaaagcccaagagttagcaaaaattgctaaagatgttgtt |
348 |
Q |
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||||||||||||| | || ||||||||||| | ||||||||||| | ||||| ||| | ||| |||||| | |||||||| |||||| |||||||| |
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| T |
1747 |
tataaagaaggctttaaggaggttgatggacagtggtgatgaagccattcaaataagacgtagagctcaagagattgcaaaaatagctaaacatgttgtt |
1846 |
T |
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| Q |
349 |
c |
349 |
Q |
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| T |
1847 |
c |
1847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 6638 - 6723
Alignment:
| Q |
82 |
gaggctattagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcg |
167 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||| | || || || |||||||| ||| | ||||| || ||||| |
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| T |
6638 |
gaggctgttagtgcaggggttccgatgatcacgtggccggtgcatggagaacaattttacaatgaaaagttgataacacaggtgcg |
6723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 193
Target Start/End: Original strand, 10584 - 10731
Alignment:
| Q |
46 |
gcgtttttgacacattgtgggtggaactctgtgacggaggctattagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatg |
145 |
Q |
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|||||| ||||||||||||||||||| || |||||| |||||| ||||||||| |||||||||||||| ||||| | || || || ||||||| |
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| T |
10584 |
gcgtttatgacacattgtgggtggaattccaccgtggaggcggttagtgcaggggttccaatgatcacgtggccaatgcatggagaacaattttacaatg |
10683 |
T |
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| Q |
146 |
agaagctcataactcatgtgcgtgggataggagtggaagtaggtgcag |
193 |
Q |
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| T |
10684 |
agaagttgataacgcaagtgcgggggattgggggggaagtgggtgcag |
10731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 192
Target Start/End: Original strand, 12483601 - 12483704
Alignment:
| Q |
89 |
ttagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtggaagtagg |
188 |
Q |
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|||||| |||| |||| ||||||||||||||||| || |||| || || ||||||||||| ||||||||| ||||||| ||||| || |||||||| || |
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| T |
12483601 |
ttagtgcagggattccaatgatcacgtggccggttcacggtgaacatttttacaatgagaaactcataactaatgtgcgagggattggtgtggaagtcgg |
12483700 |
T |
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| Q |
189 |
tgca |
192 |
Q |
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|||| |
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| T |
12483701 |
tgca |
12483704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 192
Target Start/End: Original strand, 12590260 - 12590409
Alignment:
| Q |
43 |
ggcgcgtttttgacacattgtgggtggaactctgtgacggaggctattagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctaca |
142 |
Q |
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||||||||| ||||||||||||| ||||| || || |||||| |||||| || ||||||||||||| ||||| || || |||| || || |||| |
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| T |
12590260 |
ggcgcgtttatgacacattgtggatggaattccgtcgtggaggcggttagtgctggaattccgatgatcacatggccattgaatggtgaacatttttaca |
12590359 |
T |
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| Q |
143 |
atgagaagctcataactcatgtgcgtgggataggagtggaagtaggtgca |
192 |
Q |
| |
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|||||||| | |||||| |||||| ||| || ||||||||||| |||||| |
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| T |
12590360 |
atgagaagttgataactgatgtgcatggaattggagtggaagttggtgca |
12590409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 192
Target Start/End: Original strand, 12641608 - 12641718
Alignment:
| Q |
82 |
gaggctattagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataactcatgtgcgtgggataggagtgg |
181 |
Q |
| |
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|||||| |||||| |||| |||| |||||||||||||| ||||| | || |||||||| ||||||||||| |||||| |||||| |||| || |||| |
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| T |
12641608 |
gaggctgttagtgcagggattccaatgatcacgtggccagtgcaaggagaacagttctataatgagaagctgataactgttgtgcgaaggattggggtgg |
12641707 |
T |
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| Q |
182 |
aagtaggtgca |
192 |
Q |
| |
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| || |||||| |
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| T |
12641708 |
aggtgggtgca |
12641718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 13448415 - 13448339
Alignment:
| Q |
82 |
gaggctattagtgtaggggttccgatgatcacgtggccggtgcatagtgatcagttctacaatgagaagctcataac |
158 |
Q |
| |
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|||||| |||||| || ||||| ||||| ||||||||||| ||| | ||||| |||||||||||||| || ||||| |
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| T |
13448415 |
gaggctgttagtgcgggagttccaatgataacgtggccggttcatggagatcaattctacaatgagaaactgataac |
13448339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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