View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21697_high_11 (Length: 305)
Name: NF21697_high_11
Description: NF21697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21697_high_11 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 9 - 305
Target Start/End: Original strand, 40223441 - 40223734
Alignment:
| Q |
9 |
agcagagaaaatcactaaaggaggaatcaaaccataaacaactctgctaatctttagcacagaaattcaaaataacattggtagctgatacaatgaccgt |
108 |
Q |
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| T |
40223441 |
agcagggaaaatcactaaaggaggaatcaaaccataaacaactctgctaatctt-agcacagaaattcaaagtaacattggtagctgatacaatgaccgt |
40223539 |
T |
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| Q |
109 |
aaaggaagaatcgtaccacaaacaattcgtgctactcttagcatataaaattttaaaataatatatgcatcaatcaatccaagattgcttcaacatttta |
208 |
Q |
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| T |
40223540 |
aaaggaagaatcgtaccacaaacaattcgtgctactcttagcatataaaattttaaaataatatatgcatcaatcaatccaagattgcttcaaaatttta |
40223639 |
T |
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| Q |
209 |
ttcagacnnnnnnnncattcacatggtaaaaccccccaaacagtaattgaactgcaagagtatcatctcaagtttaactctcattcatggtgacata |
305 |
Q |
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| T |
40223640 |
tt--gacaaaaaaaacattcacattgtaaaaccccccaaacagtaattgaactgcaagagtatcatctcaagtttaactctcattcatggtgacata |
40223734 |
T |
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Target: chr7 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 36313634 - 36313926
Alignment:
| Q |
24 |
taaaggaggaatcaaaccataaacaactctgctaatctttagcaca--gaaattcaaaataacattggtagctgatacaatgaccgtaaaggaagaatcg |
121 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||| |||||||| ||||||||||||| | |
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| T |
36313634 |
taaaggaagaatcaaaccataaacaactctgctaatctt-agcacatagaatttcaaaataacattggtagctgaaacaatgactgtaaaggaagaattg |
36313732 |
T |
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| Q |
122 |
-taccacaaac--aattcgtgctactcttagcatataaaattttaaaataatatatgcatcaatcaatccaagattgcttcaaca--ttttatt----ca |
212 |
Q |
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| T |
36313733 |
cttcaacatccgagattcgtgctgctcttagcatatagaattttaaaacaatatatgcatcaatcaatccaagattgcttcaacattttttattctaaca |
36313832 |
T |
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| Q |
213 |
gacnnnnnnnncattcacatggt--aaaaccccccaaacagtaattgaactgcaagagtatcatctcaagtttaactctcattcatggtgacat |
304 |
Q |
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| T |
36313833 |
aaaaaaaaaaacattcacatcgtaaaaaaccccccaaatagtaattgaactgcaagagtctcatctcaagtttaactatcatttatgttgacat |
36313926 |
T |
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