View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21697_high_7 (Length: 315)
Name: NF21697_high_7
Description: NF21697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21697_high_7 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 54641938 - 54642247
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54641938 |
ctatcgcggtgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaaccttgagtcgtcaaccgttccaattcagtttcaggttcctc |
54642037 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
54642038 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggtgtcga |
54642137 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54642138 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
54642237 |
T |
|
| Q |
306 |
caatgcatgg |
315 |
Q |
| |
|
|||||||||| |
|
|
| T |
54642238 |
caatgcatgg |
54642247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 54938423 - 54938729
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
54938423 |
ctatcgcggtgggatttggattgccctggtcaatatcttgtggttgaatattgaatgaaccttgagtcgtcaaccgctccaattcagtttcaggttcctc |
54938522 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
54938523 |
ttctttatcagacataggcatgatatcccgatattccggttttaaacgccaaataaatgcaagtgagaacatatgccaactaacctgttgatggcgtcga |
54938622 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
54938623 |
ttccaccagtgtgaccattggcgagcacgacctctgaataacatcagcgcatctgtcagtttctcctcatctggtgtatctctctttttg-aatgttcct |
54938721 |
T |
|
| Q |
306 |
caatgcat |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
54938722 |
caatgcat |
54938729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 6 - 313
Target Start/End: Complemental strand, 13078087 - 13077780
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
13078087 |
ctatcgcggtgggatttggattgccctggtcaatatcttgtggttgaatattgaatgaaccttgagtcgtcaaccactccaattcagtttcaggttcctc |
13077988 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
13077987 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagtgagaacatatgccaactaacctgttgatggcgtcga |
13077888 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
13077887 |
ttccaccagtgtgaccattggcgagtacgacctctgagtaacatcaacgcatctgtcagtttctcctcatctggtgtatctctctttttgaaatgttcct |
13077788 |
T |
|
| Q |
306 |
caatgcat |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
13077787 |
caatgcat |
13077780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 313
Target Start/End: Original strand, 39984397 - 39984704
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
39984397 |
ctatcgcggtgggatttggattgccctggtcaatatcttgtggttgaatattgaatgaaccttgagtcgtcaaccactccaattcagtttcaggttcctc |
39984496 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39984497 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagtaagaacatatgccaactaacctgttgatggcgtcga |
39984596 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39984597 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacgcatctgtcagcttctcctcatctggtgtatctctctttttgaaatgttcct |
39984696 |
T |
|
| Q |
306 |
caatgcat |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
39984697 |
caatgcat |
39984704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 6 - 313
Target Start/End: Complemental strand, 14685113 - 14684806
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
14685113 |
ctatcgcggtgggatttggattgccctggtcaatatcttgtggttgaatattgaatgaaccttgagtcgtcaaccactccaattcagtttcaggttcctc |
14685014 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14685013 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagtaagaacatatgccaactaacctgttgatggcgtcga |
14684914 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14684913 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacgcatctgtcagcttctcctcatctggtgtatctctctttttgaaatgttcct |
14684814 |
T |
|
| Q |
306 |
caatgcat |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
14684813 |
caatgcat |
14684806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 313
Target Start/End: Complemental strand, 21306969 - 21306662
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
21306969 |
ctatcgcggtgggatttggattgccctggtcaatatcttgtggttgaatatcgaatgaaccttgagtcgtcaaccactccaattcagtttcaggttcctc |
21306870 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
21306869 |
ttcttcatcagacataggtatgatatcccgatattccggtttaaaacgccaaataaatgcaagtgagaacatatgccaactaacctgttgatggcgtcga |
21306770 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21306769 |
ttccaccagtgtgaccattggcgagtacgacctctgagtaacatcaacgcatctgtcagtttctcctcatctggtgtatctctctttttgaaatgttcct |
21306670 |
T |
|
| Q |
306 |
caatgcat |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
21306669 |
caatgcat |
21306662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 6 - 313
Target Start/End: Complemental strand, 40421937 - 40421630
Alignment:
| Q |
6 |
ctatcgtgttgggatttggatttccctggtcaatatcttgtggttgaatattgaatgaatcttgagtcgtcaaccgttccaattcagtttcaggttcttc |
105 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
40421937 |
ctatcgcggtgggatttggattgccctggtcaatatcttgtggttgaatattgaatgaaccttgagtcgtcaaccactccaattcagtttcaggttcctc |
40421838 |
T |
|
| Q |
106 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
40421837 |
ttcttcatcagacataggcatgatatcccgatattccggtttaaaacgccaaataaatgcaagtaagaacatatgccaactaacctgttgatggcttcga |
40421738 |
T |
|
| Q |
206 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttttgaaatgttcct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40421737 |
ttccaccagtgtgaccattggcgagcacgacctctgagtaacatcaacgcatctgtcagcttctcctcatctggtgtatctctctttttgaaatgttcct |
40421638 |
T |
|
| Q |
306 |
caatgcat |
313 |
Q |
| |
|
|||||||| |
|
|
| T |
40421637 |
caatgcat |
40421630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 131 - 311
Target Start/End: Original strand, 5116530 - 5116711
Alignment:
| Q |
131 |
tcccgatattccggtttaaaacgccaaataaatgcaagcgggaacatatgccaactaacctgttgatggcgtcgattccaccagtgtgaccattggcgag |
230 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||| ||| | ||| | ||||||||||||||||||| |||| ||| ||||||| ||| || || || |
|
|
| T |
5116530 |
tcccgatattctggcttaaaatgccaaataaatgcgagcagtaacgtgcgccaactaacctgttgatgacgtcaattataccagtgcgactatcggtgaa |
5116629 |
T |
|
| Q |
231 |
cacgacctctgagtaacatcaacacatctgtcagtttctcctcatctggtgtacctctctttt-tgaaatgttcctcaatgc |
311 |
Q |
| |
|
||| |||||||||||| ||||||| |||||| |||||||||| |||||||| | ||||||| |||||||||||||||| |
|
|
| T |
5116630 |
cacagcctctgagtaacttcaacacctctgtcggtttctcctcctctggtgtttccctcttttccaaaatgttcctcaatgc |
5116711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University