View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21697_high_8 (Length: 314)

Name: NF21697_high_8
Description: NF21697
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21697_high_8
NF21697_high_8
[»] chr4 (1 HSPs)
chr4 (30-314)||(25703204-25703488)


Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 30 - 314
Target Start/End: Original strand, 25703204 - 25703488
Alignment:
Q  30 ttttccatcttgatgaccggtgaagatgtttccttcggatataacaatggttttgaccaaaccactacttgatttaaaaccggtataatctttaagttct 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  25703204 ttttccatcttgatgaccggtgaagatgtttccttcggatataacaatggatttgaccaaaccactacttgatttaaaaccggtataatctttaagttct 25703303  T
Q  130 ttccacacccttatgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcgagctagtgacccga 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25703304 ttccacacccttatgtttttgctatcggtaccggtgtataacatgtcaccggaaacggctaaggagtagatgtgaccttcttcgcgagctagtgacccga 25703403  T
Q  230 tgaggccattttccgggaaatagctgtcgttgtaattgttgtcgtggcggtggctgtggtggtattggaagaggttgattgcttc 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25703404 tgaggccattttccgggaaatagctgtcgttgtaattgttgtcgtggcggtggctgtggtggtattggaagaggttgattgcttc 25703488  T

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