View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21698_high_1 (Length: 340)
Name: NF21698_high_1
Description: NF21698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21698_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 18139224 - 18139473
Alignment:
| Q |
18 |
ttaagtttgacctatcacttactcctnnnnnnnttctgacccatcactttaatacatcagtaaatgaattgatattaaaatttgtctccatatactccat |
117 |
Q |
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| T |
18139224 |
ttaagtttgacctatcacttactcctaaaaaaactttgacctatcactttaatatatcaataaatgaattgatattaaaatttgtctccatatactccat |
18139323 |
T |
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| Q |
118 |
tctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtacatgtatatatgtgtgtgaatttagaaattt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18139324 |
tctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtacatgtatatatgtgtgtgaatttagaaattt |
18139423 |
T |
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| Q |
218 |
acacctaattatttagaaattatttccacgcattaaaactcgactttttc |
267 |
Q |
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| T |
18139424 |
acacctaactatttagaaattatttccacgcattaaaactcgactttttc |
18139473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 49126437 - 49126686
Alignment:
| Q |
18 |
ttaagtttgacctatcacttactcctnnnnnnnttctgacccatcactttaatacatcagtaaatgaattgatattaaaatttgtctccatatactccat |
117 |
Q |
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|||||||||||||||||||||||||| | ||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49126437 |
ttaagtttgacctatcacttactcctaaaaaaactttgacctatcactttaatatatcaataaatgaattgatattaaaatttgtctccatatactccat |
49126536 |
T |
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| Q |
118 |
tctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtacatgtatatatgtgtgtgaatttagaaattt |
217 |
Q |
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| T |
49126537 |
tctattatccttattatataataagtatttttgttttatatgaataaattagcatcaattatatatgtacatgtatatatgtgtgtgaatttagaaattt |
49126636 |
T |
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| Q |
218 |
acacctaattatttagaaattatttccacgcattaaaactcgactttttc |
267 |
Q |
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| T |
49126637 |
acacctaactatttagaaattatttccacgcattaaaactcgactttttc |
49126686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 18139462 - 18139506
Alignment:
| Q |
288 |
ctcgattttttcttcatttttctgtatgagtttttaatgatgatg |
332 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
18139462 |
ctcgactttttctccatttttctgtatgagtttttaatgatgatg |
18139506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 49126675 - 49126719
Alignment:
| Q |
288 |
ctcgattttttcttcatttttctgtatgagtttttaatgatgatg |
332 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
49126675 |
ctcgactttttctccatttttctgtatgagtttttaatgatgatg |
49126719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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