View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21698_high_11 (Length: 339)

Name: NF21698_high_11
Description: NF21698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21698_high_11
NF21698_high_11
[»] chr1 (1 HSPs)
chr1 (1-339)||(50654694-50655030)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 50655030 - 50654694
Alignment:
Q  1 atcatatcccaatattcat--gactgagaaagatagaaatcaatatcttagnnnnnnnnnnnnngttgagggaaaatcaatatcatagtgactgaatcat 98  Q
    |||||||||||||||||||  || |||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||    
T  50655030 atcatatcccaatattcatatgattgagaaagatagaaatcaatatcttagtttttttttt----ttgagggaaaatcaatatcatagtgactgaatcat 50654935  T
Q  99 tttgcaattcataagtaacattcattagtctttttagcatagtataagtttcctcacttgaactgattggtttgctctcaaatgatacaatcttcttaat 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50654934 tttgcaattcataagtaacattcattagtctttttagcatagtataattttcctcacttgaactaattggtttgctctcaaatgatacaatcttcttaat 50654835  T
Q  199 tacagattccaattttatgtggactaacagatccttagttcgggttaatggtttttgttgaactataggttttggattttatttggttgcataaattgtt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50654834 tacagattccaattttatgtggactaacagatccttagttcgggttattggtttttgttgaactataggttttggattttatttggttgcataaattgtt 50654735  T
Q  299 gtcttgaattcctgtttacccattatttgttattattgatg 339  Q
    ||| |||||||||||| |||||||||||||||||| |||||    
T  50654734 gtcgtgaattcctgttcacccattatttgttattactgatg 50654694  T

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