View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21698_high_1_N (Length: 879)
Name: NF21698_high_1_N
Description: NF21698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21698_high_1_N |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 28 - 445
Target Start/End: Original strand, 43325780 - 43326198
Alignment:
| Q |
28 |
aacaactatattaatcacgtttcttatttaaataaaattataaatcacgttataaagtgcatatgccaagggctatgcactataattttggttgctccac |
127 |
Q |
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| T |
43325780 |
aacaactatattaatcacgtttcttatttaaataaaattattaatcacgttataaagtgcatatgccaagggctatgcactataattttggttgctccac |
43325879 |
T |
|
| Q |
128 |
caggaatgaaaactttt-aagcatgaaattttttattaaaaactgatgttgatttgttttgaagttcaaatgcataaaggtatgacatnnnnnnntaaat |
226 |
Q |
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| T |
43325880 |
caggaatgaaaactttttaagcatgaaaatttttattaaaaactgatgttggtttgttttgaagttcaaatgcataaaggtatgacataaaaaagtaaat |
43325979 |
T |
|
| Q |
227 |
cacttttttccatttgggacaattcgagggactaaatggacgttgacttagaagtacatatatacaatgaatgattttaaagattatggggtgtcaattt |
326 |
Q |
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| T |
43325980 |
cacttttttccatttgggacaattcgagggactaaatggacgttgacttagaagtagatatatacaatgaatgattttaaagatcatggggtgtcaattt |
43326079 |
T |
|
| Q |
327 |
tcttttgcatgatttttggttaggctaccctctcttggtcactaatttgtaatgttgaagacatgttgagagattcgtaaaatttgtagcaagaaatgga |
426 |
Q |
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| T |
43326080 |
tcttttgcatgatttttggttaggctaccctctcttagtcactaatttgtaatgttgaagacatgttgagagattcgtaaaatttgtagcaagaaatgga |
43326179 |
T |
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| Q |
427 |
gttcatatgaaggatggtc |
445 |
Q |
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| T |
43326180 |
gttcatatgaaggatggtc |
43326198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 697 - 851
Target Start/End: Original strand, 43326563 - 43326719
Alignment:
| Q |
697 |
ttctctaatacacactttttactatcgttttatcaattaaaaatcgtgagtttcataagatttattagagacttacatgatttgatttgattgagctcat |
796 |
Q |
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| T |
43326563 |
ttctcgaatacacactttttactatcgttttatcaattaaaaatcatgagtttcataagatttattagagacttacatgatttgatttgattgagctcat |
43326662 |
T |
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| Q |
797 |
atgagttttataaataaa--agtgtgagtagtatgtgctaaagaatgtgatgatgtc |
851 |
Q |
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| T |
43326663 |
atgagttttacaaataaaagagtgtgagtagtatgtgctaaagaatgtgatgatgtc |
43326719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 531 - 633
Target Start/End: Original strand, 43326276 - 43326378
Alignment:
| Q |
531 |
tattataaaatatttagatannnnnnnaagggaaaatatttacgtattaatgagtttgatcaaaatatgatttatgatataatttgattaagatatcatt |
630 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43326276 |
tattataaaatatttagatatttttttaagggaaaatatttacgtattaatgagtttgatcaaaatatgatttatgatataatttgattaagatctcatt |
43326375 |
T |
|
| Q |
631 |
tgg |
633 |
Q |
| |
|
||| |
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|
| T |
43326376 |
tgg |
43326378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 609
Target Start/End: Original strand, 5908826 - 5908859
Alignment:
| Q |
576 |
attaatgagtttgatcaaaatatgatttatgata |
609 |
Q |
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| T |
5908826 |
attaatgagttggatcaaaatatgatttatgata |
5908859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 609
Target Start/End: Original strand, 45601656 - 45601689
Alignment:
| Q |
576 |
attaatgagtttgatcaaaatatgatttatgata |
609 |
Q |
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||||||||||| |||||||||||||||||||||| |
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| T |
45601656 |
attaatgagttggatcaaaatatgatttatgata |
45601689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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