View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21698_high_2 (Length: 565)
Name: NF21698_high_2
Description: NF21698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21698_high_2 |
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| [»] chr7 (9 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 459; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 25 - 565
Target Start/End: Complemental strand, 16993261 - 16992727
Alignment:
| Q |
25 |
cctaacacagacaaagagacattaaacgaatacaagttgtttcttgttcttgtttggnnnnnnnnnngttgttgttgtttgtgatggctggtttttctag |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
16993261 |
cctaacacagacaaagagacattaaacgaatacaagttgtttcttgttcttgtttggttttttt---gttgttgttgtttgtgatggctggtttttctag |
16993165 |
T |
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| Q |
125 |
caagaatgtaccgttattcggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaag |
224 |
Q |
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| T |
16993164 |
caagaatgttccgttattcggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaag |
16993065 |
T |
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| Q |
225 |
agtgatgaagaagataagggtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaattt |
324 |
Q |
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| T |
16993064 |
agtgatgaagaagataagggtttggaatatgtttctggttctaaaaaaagaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaattt |
16992965 |
T |
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| Q |
325 |
ccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggtgaaagtggaggaagtggtga |
424 |
Q |
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| T |
16992964 |
ccatcgatgatgatgaatatgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtctgagggtggtggtgaaagtggaggaa---gtga |
16992868 |
T |
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| Q |
425 |
ttttgatgctaaagatggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtgaagaacac |
524 |
Q |
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| T |
16992867 |
ttttgatgctaaagatggaaagtttgttgatgaaaagtgtggggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtgaagaacac |
16992768 |
T |
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| Q |
525 |
tctgttgattctgatgctgataatgaagaagaagaaaaaga |
565 |
Q |
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| T |
16992767 |
tctgttgattctgatcctgataacgaagaagaagaaaaaga |
16992727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 16824980 - 16824899
Alignment:
| Q |
144 |
ggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaaga |
225 |
Q |
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| T |
16824980 |
ggtgtttctagcagaactcgtagcaaaaatgttccattgtttagttgtgttccacttgttgggtcatcaaaacggagaaaga |
16824899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 426 - 560
Target Start/End: Complemental strand, 17008625 - 17008485
Alignment:
| Q |
426 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg---ggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---ag |
519 |
Q |
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| T |
17008625 |
tttgatgctaaagagggaaactttgttgagaaaaaatgtggtttggatgaagataacccgatttcaatatgttctgatgagtatagtgagagtgatgaag |
17008526 |
T |
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| Q |
520 |
aacactctgttgattctgatgctgataatgaagaagaagaa |
560 |
Q |
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| T |
17008525 |
aacactctgttggttttggtggtgataatgaagaagaagaa |
17008485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 266
Target Start/End: Original strand, 10600805 - 10600871
Alignment:
| Q |
200 |
tggtgggtcatcaaagcggagaaagagtgatgaagaagataagggtttggaatatgtttctggttct |
266 |
Q |
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| T |
10600805 |
tggtggttcatcaaagcggagaaagagtgatgaagatgatatgagttttgactctctttctggttct |
10600871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 426 - 466
Target Start/End: Original strand, 10601253 - 10601293
Alignment:
| Q |
426 |
tttgatgctaaagatggaaagtttgttgatgaaaagtgtgg |
466 |
Q |
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|||||||| |||||||||||||||||||| ||||||||||| |
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| T |
10601253 |
tttgatgcgaaagatggaaagtttgttgacgaaaagtgtgg |
10601293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 194
Target Start/End: Complemental strand, 16969450 - 16969404
Alignment:
| Q |
148 |
tttcgagcagaactcgtagcaagaatgttccgttgtttggttctctt |
194 |
Q |
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| T |
16969450 |
tttctagcagaactcgtagcaaaaatgttccattgtttggttgtctt |
16969404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 16969275 - 16969214
Alignment:
| Q |
284 |
tgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatgaatatg |
345 |
Q |
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| T |
16969275 |
tgaagaaccttttgtggttcctgaaggtgccaaggtaatttccattgaacatgatgattatg |
16969214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 17008759 - 17008718
Alignment:
| Q |
154 |
gcagaactcgtagcaagaatgttccgttgtttggttctcttt |
195 |
Q |
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| T |
17008759 |
gcagaactcgtagcaaaaatgtgccattgtttggttctcttt |
17008718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 155 - 188
Target Start/End: Complemental strand, 17008878 - 17008845
Alignment:
| Q |
155 |
cagaactcgtagcaagaatgttccgttgtttggt |
188 |
Q |
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| T |
17008878 |
cagaactcgtagcaagaatgttccattgtttggt |
17008845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 144 - 392
Target Start/End: Original strand, 35262170 - 35262418
Alignment:
| Q |
144 |
ggtgtttcgagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtgggtcatcaaagcggagaaagagtgatgaagaagataagg |
243 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
35262170 |
ggtgtttctagcagaactcgtagcaagaatgttccgttgtttggttctcttttacttggtggttcatcaaaacggagaaagagtgatgaagaagataagg |
35262269 |
T |
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| Q |
244 |
gtttggaatatgtttctggttctnnnnnnngaaagatgactgaagaaccttttgttgttcctgcagatgccgaggtaatttccatcgatgatgatgaata |
343 |
Q |
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| T |
35262270 |
ggttggactatgtttctcgttctaaaaaaaggaagatgaacgaagaaccttttgttgttcctgcagatgctgaggtagtttccatcgatgatgatgaata |
35262369 |
T |
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| Q |
344 |
tgaagatgttggtgaagaagggttggaacatagtgatgagaagatgtct |
392 |
Q |
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| T |
35262370 |
tgaagatgttggtcaagaaggttcagagcatagtgatgacaagatgtct |
35262418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 433 - 559
Target Start/End: Original strand, 35262417 - 35262549
Alignment:
| Q |
433 |
ctaaagatggaaagtttgttgatgaaaagtgtg---gggcacaagataacctgatttcgataaattcagatgagtatggtgaaagtga---agaacactc |
526 |
Q |
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|||||||||||||||||||||||||||| |||| ||| ||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||| |
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| T |
35262417 |
ctaaagatggaaagtttgttgatgaaaattgtgagagggaacaagataacccggtttcgataagttcagatgagtatggtgaaagtgatgaagaacactt |
35262516 |
T |
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| Q |
527 |
tgttgattctgatgctgataatgaagaagaaga |
559 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35262517 |
tgttgattctgatgctgataatgaagaagaaga |
35262549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 35262149 - 35262182
Alignment:
| Q |
93 |
ttgttgttgtttgtgatggctggtttttctagca |
126 |
Q |
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| T |
35262149 |
ttgttgttgtttgtgatggctggtgtttctagca |
35262182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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