View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21698_high_7 (Length: 360)
Name: NF21698_high_7
Description: NF21698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21698_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 83 - 332
Target Start/End: Complemental strand, 18139473 - 18139224
Alignment:
| Q |
83 |
gaaaaagtcgagttttaatgcgtggaaataatttctaaataattaggtgtaaatttctaaattcacacacatatatacatgtacatatataattgatgct |
182 |
Q |
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| T |
18139473 |
gaaaaagtcgagttttaatgcgtggaaataatttctaaatagttaggtgtaaatttctaaattcacacacatatatacatgtacatatataattgatgct |
18139374 |
T |
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| Q |
183 |
aatttattcatataaaacaaaaatacttattatataataaggataatagaatggagtatatggagacaaattttaatatcaattcatttactgatgtatt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
18139373 |
aatttattcatataaaacaaaaatacttattatataataaggataatagaatggagtatatggagacaaattttaatatcaattcatttattgatatatt |
18139274 |
T |
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| Q |
283 |
aaagtgatgggtcagaannnnnnnaggagtaagtgataggtcaaacttaa |
332 |
Q |
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| T |
18139273 |
aaagtgataggtcaaagtttttttaggagtaagtgataggtcaaacttaa |
18139224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 83 - 332
Target Start/End: Complemental strand, 49126686 - 49126437
Alignment:
| Q |
83 |
gaaaaagtcgagttttaatgcgtggaaataatttctaaataattaggtgtaaatttctaaattcacacacatatatacatgtacatatataattgatgct |
182 |
Q |
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| T |
49126686 |
gaaaaagtcgagttttaatgcgtggaaataatttctaaatagttaggtgtaaatttctaaattcacacacatatatacatgtacatatataattgatgct |
49126587 |
T |
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| Q |
183 |
aatttattcatataaaacaaaaatacttattatataataaggataatagaatggagtatatggagacaaattttaatatcaattcatttactgatgtatt |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
49126586 |
aatttattcatataaaacaaaaatacttattatataataaggataatagaatggagtatatggagacaaattttaatatcaattcatttattgatatatt |
49126487 |
T |
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| Q |
283 |
aaagtgatgggtcagaannnnnnnaggagtaagtgataggtcaaacttaa |
332 |
Q |
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| T |
49126486 |
aaagtgataggtcaaagtttttttaggagtaagtgataggtcaaacttaa |
49126437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 18139506 - 18139462
Alignment:
| Q |
17 |
catcatcattaaaaactcatacagaaaaatgaagaaaaaatcgag |
61 |
Q |
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| T |
18139506 |
catcatcattaaaaactcatacagaaaaatggagaaaaagtcgag |
18139462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Complemental strand, 49126719 - 49126675
Alignment:
| Q |
17 |
catcatcattaaaaactcatacagaaaaatgaagaaaaaatcgag |
61 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
49126719 |
catcatcattaaaaactcatacagaaaaatggagaaaaagtcgag |
49126675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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