View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21699_high_12 (Length: 317)
Name: NF21699_high_12
Description: NF21699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21699_high_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 30 - 317
Target Start/End: Original strand, 7902183 - 7902470
Alignment:
| Q |
30 |
ctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaa |
129 |
Q |
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| T |
7902183 |
ctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaa |
7902282 |
T |
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| Q |
130 |
atatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaaggga |
229 |
Q |
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| T |
7902283 |
atatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaaggga |
7902382 |
T |
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| Q |
230 |
agacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggt |
317 |
Q |
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| T |
7902383 |
agacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggt |
7902470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 311
Target Start/End: Original strand, 7892072 - 7892191
Alignment:
| Q |
192 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
291 |
Q |
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| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
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| Q |
292 |
ggtcacaacatgacagtagt |
311 |
Q |
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| T |
7892172 |
ggtcacaacatgacagtagt |
7892191 |
T |
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