View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21699_high_14 (Length: 313)
Name: NF21699_high_14
Description: NF21699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21699_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 2062541 - 2062840
Alignment:
| Q |
1 |
tcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
2062541 |
tcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaaaaaatagttctgctgagtatcgcgctttaattttgggtctaaagcaagcaat |
2062640 |
T |
|
| Q |
101 |
ctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtttctacattaacaagaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2062641 |
ctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtttctacattaacaagaaaa |
2062740 |
T |
|
| Q |
201 |
tgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaatttatcgagcttgtgtgatgatg |
300 |
Q |
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||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
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| T |
2062741 |
tgaaatttacaattttcttataacatgttattggttttgcaacagtttttgggttcatggaaaatcagcaacccgaatttattgagcttgtgtgatgatg |
2062840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 2058115 - 2058410
Alignment:
| Q |
1 |
tcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaat |
100 |
Q |
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|||||||||| ||||||| |||||| ||||||||||| || ||| ||| |||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2058115 |
tcttttcttcacagctctatcgattccgtgaaggactgggcgatcagacagatagttctgctgagtatcgcgctttaattttgggactaaagcaagcaat |
2058214 |
T |
|
| Q |
101 |
ctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatatatggtttctacattaacaagaaaa |
200 |
Q |
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| T |
2058215 |
ctataaaagatttagaaacatcattgtgcaaggagacaccatacgtgttatcaaccaggtttgtgttctat----tatggtttttgcattaacaagaaaa |
2058310 |
T |
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| Q |
201 |
tgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaatttatcgagcttgtgtgatgatg |
300 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
2058311 |
tgaaatttacaattttcttataatatgttattggttttgcaacagtttttgggttcatggaaaatcatgaaccctaatttattgagcttgtgtgatgatg |
2058410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 2047443 - 2047606
Alignment:
| Q |
1 |
tcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaat |
100 |
Q |
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||||||||| ||||||| |||||| ||||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
2047443 |
tcttttctttacagctctatcgattccgtgaaggactgggctatcaaacaaataacgctgctgagtatcgtgctttaattttgggacttaatcaagcaat |
2047542 |
T |
|
| Q |
101 |
ctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgt |
164 |
Q |
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||||||| ||| ||||||||||| |||||| ||||||||| | | |||| |||| ||||||||| |
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| T |
2047543 |
ctataaaggatataggaacatcagtgtgcatggagactccttgcttgttgtcaatcaggtttgt |
2047606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 2054004 - 2054179
Alignment:
| Q |
1 |
tcttttcttcgcagctctttcgatttcgtgaaggactaggttgtcaaacaaataggtctgctgagtatcgtgctttaattttgggactaaagcaagcaat |
100 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||||| || | ||||||||||| ||||||||| || ||||| || |||||||| || ||||| || |
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| T |
2054004 |
tcttttcttcgcagctctatcgattccgtgaaggactgggctatcaaacaaataacgttgctgagtaccgcgctttgatattgggactgaaacaagctat |
2054103 |
T |
|
| Q |
101 |
ctataaaagatttaggaacatcactgtgcaaggagactccatacatgttatcaaccaggtttgtgttctattatat |
176 |
Q |
| |
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| ||||| |||||| |||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||||||| |
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| T |
2054104 |
caataaaggatttaagaacatcagtgtgcaaggagactccaaccttgttatcaatcaggtttgtgttctattatat |
2054179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 198 - 273
Target Start/End: Original strand, 2054339 - 2054414
Alignment:
| Q |
198 |
aaatgaaatttacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaacc |
273 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
2054339 |
aaatgaaatttacaattttcttatcatatgttattggttttgcaacagtttctgggttcatggaaaatcaacaacc |
2054414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 274
Target Start/End: Original strand, 2048106 - 2048172
Alignment:
| Q |
208 |
tacatttttcttatcatatgttattggttttgcaacagtttttgggttcatggaaaatcagcaaccc |
274 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
2048106 |
tacattttttgtatcacttgttattggttttgcaacagtttctgggtatatggaaaatcaacaaccc |
2048172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 2088570 - 2088606
Alignment:
| Q |
223 |
atatgttattggttttgcaacagtttttgggttcatg |
259 |
Q |
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| T |
2088570 |
atatgttattggttttgcaacagtttaagggttcatg |
2088606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Complemental strand, 39183084 - 39183031
Alignment:
| Q |
228 |
ttattggttttgcaacagtttttgggttcatggaaaatcagcaaccctaattta |
281 |
Q |
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||||||||||||||||||||| |||||| |||||| ||| |||||| |||||| |
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| T |
39183084 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaattta |
39183031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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