View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21699_high_6 (Length: 343)
Name: NF21699_high_6
Description: NF21699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21699_high_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 27430027 - 27430352
Alignment:
| Q |
18 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
117 |
Q |
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| T |
27430027 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27430126 |
T |
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| Q |
118 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa |
217 |
Q |
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| T |
27430127 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactgatgatgatgatgttgatggataagaa |
27430226 |
T |
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| Q |
218 |
gatgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctagggaacatggaagactggtcacaaggagaatccattatgatct |
317 |
Q |
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| T |
27430227 |
gatgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctaaggaacatggaagactggtcacaaggagaatccattatgatct |
27430326 |
T |
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| Q |
318 |
cagggctttgcaagattctacaagta |
343 |
Q |
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| T |
27430327 |
cagagctttgcaagattctacaagta |
27430352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 27447304 - 27447478
Alignment:
| Q |
18 |
ggacatcatcatacatgatatcaggaatgttgacacctaaatgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
117 |
Q |
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| T |
27447304 |
ggacatcatcatacatgatatcagaaatatggacacctaagtgatcatgagaatcaagtgttgatgatagtgtgacatccttttctggatcatcaaaagt |
27447403 |
T |
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| Q |
118 |
tagtccagagaggtaatcatttgaagaaggaggaggatgaacaatctcttccttgcaatcctcccttttcactga |
192 |
Q |
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| T |
27447404 |
gagtccagagaggtaatcatttgaagaaggaggaggatgaacaacctcttccttgcactcctcctttttcactga |
27447478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 220 - 343
Target Start/End: Original strand, 27447476 - 27447599
Alignment:
| Q |
220 |
tgagagaaaagggcaatcttgtttggctggtgttgggaaagagttgtcaaagctagggaacatggaagactggtcacaaggagaatccattatgatctca |
319 |
Q |
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|||||||||||| || ||||||||||||||||||||||||||||||||||| ||| | ||||||||||| || ||| |||| |||| | |||||||||| |
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| T |
27447476 |
tgagagaaaaggacagtcttgtttggctggtgttgggaaagagttgtcaaaactaagaaacatggaagagtgatcagtaggataatctactatgatctca |
27447575 |
T |
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| Q |
320 |
gggctttgcaagattctacaagta |
343 |
Q |
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| T |
27447576 |
gggttttgcaagattctacaagta |
27447599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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