View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21699_high_7 (Length: 342)

Name: NF21699_high_7
Description: NF21699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21699_high_7
NF21699_high_7
[»] chr1 (3 HSPs)
chr1 (1-82)||(39216682-39216763)
chr1 (259-336)||(39216934-39217011)
chr1 (110-158)||(39216791-39216839)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 39216682 - 39216763
Alignment:
Q  1 aaaacagtgtttaagctcagttacacaataatctattcaaaagatcacaaggatacggaaattgaaacaagcaataaatttg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39216682 aaaacagtgtttaagctcagttacacaataatctattcaaaagatcacaaggatacggaaattgaaacaagcaataaatttg 39216763  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 259 - 336
Target Start/End: Original strand, 39216934 - 39217011
Alignment:
Q  259 gatgctgaacctcgctgaggtaacgtttgtgagaacgaagattgtcgacataaacttcttcttcggggtctgtggtgc 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39216934 gatgctgaacctcgctgaggtaacgtttgtgagaacgaagattgtcgacataaacttcttcttcggggtctctggtgc 39217011  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 39216791 - 39216839
Alignment:
Q  110 tctatcctagattcacaataactgctaagtgggcaaatattgaaacctt 158  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39216791 tctatcctagattcacaataactgctaagtgggtaaatattgaaacctt 39216839  T

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