View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21699_high_9 (Length: 338)
Name: NF21699_high_9
Description: NF21699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21699_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 51856599 - 51856281
Alignment:
| Q |
1 |
atctcgttttaaaacaggtttaatcaatctagtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtc |
100 |
Q |
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| T |
51856599 |
atctcgttttaaatcaggtttaatcgatctagtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattagagatgaaaatcagtc |
51856500 |
T |
|
| Q |
101 |
tcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856499 |
tcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaa |
51856400 |
T |
|
| Q |
201 |
tcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttannnn |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856399 |
tcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttatttt |
51856300 |
T |
|
| Q |
301 |
nnngctctgtgatgatgtc |
319 |
Q |
| |
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|||||||||||||||| |
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| T |
51856299 |
tttgctctgtgatgatgtc |
51856281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 51856711 - 51856680
Alignment:
| Q |
31 |
agtttgaagggtaacaagccactcttatattg |
62 |
Q |
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| T |
51856711 |
agtttgaagggtaacaagccactcttatattg |
51856680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 31 - 319
Target Start/End: Complemental strand, 8945755 - 8945467
Alignment:
| Q |
31 |
agtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattact |
130 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8945755 |
agtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattact |
8945656 |
T |
|
| Q |
131 |
gttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattatta |
230 |
Q |
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| T |
8945655 |
gttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattatta |
8945556 |
T |
|
| Q |
231 |
tacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttannnnnnngctctgtgatgatgtc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8945555 |
tacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatacttatttttttgctctgtgatgatgtc |
8945467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
85 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
184 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
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| Q |
185 |
ttacagaaaaataaaat |
201 |
Q |
| |
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||||||||||| ||||| |
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| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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