View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21699_low_2 (Length: 238)
Name: NF21699_low_2
Description: NF21699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21699_low_2 |
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| [»] chr2 (5 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 35105791 - 35106029
Alignment:
| Q |
1 |
tgagatgga-catcatcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaat |
99 |
Q |
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| T |
35105791 |
tgagatggatcaacatcataaaaaacagggaaaacagtttgtttcaatcttttacggcattcagcaacagtagccatctcttccaaacaccatgttgact |
35105890 |
T |
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| Q |
100 |
cggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatc |
199 |
Q |
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| T |
35105891 |
cggcatatctttcagagaagacaacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgatc |
35105990 |
T |
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| Q |
200 |
atccttgaaggcaaaaataccctttctttttagatgagc |
238 |
Q |
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| T |
35105991 |
atccttgaaggcaaaaataccctttctttttagatgagc |
35106029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 35183753 - 35183978
Alignment:
| Q |
13 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
112 |
Q |
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| T |
35183753 |
catcataaaaaatagggaaaacagtctgtttcaattctgtatgatattcagcaatagtggccatctcttccaaacataatgttgactccgcataattttt |
35183852 |
T |
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| Q |
113 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
212 |
Q |
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| T |
35183853 |
agagaagacaacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcg |
35183952 |
T |
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| Q |
213 |
aaaataccctttctttttagatgagc |
238 |
Q |
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| T |
35183953 |
aaaatacccttagttgttagatgagc |
35183978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 238
Target Start/End: Original strand, 35054891 - 35055116
Alignment:
| Q |
13 |
catcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttg |
112 |
Q |
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| T |
35054891 |
catcataaaaaatagggaaaactgtttgtttgaaatactcacaacaatcagcaattgcagccatctcttccaaacaccaagttgattcggcatatgtttt |
35054990 |
T |
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| Q |
113 |
agagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggca |
212 |
Q |
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| T |
35054991 |
agagaagacaacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggca |
35055090 |
T |
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| Q |
213 |
aaaataccctttctttttagatgagc |
238 |
Q |
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| T |
35055091 |
aaaataccttttcttgttagatgagc |
35055116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 238
Target Start/End: Original strand, 35177756 - 35177980
Alignment:
| Q |
14 |
atcataaaaaccagggaaaacagtttgtttcaatttttcatggcattcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttga |
113 |
Q |
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| T |
35177756 |
atcataaaaaacagggaaaacagtttgtaagaaattgctacgacattcaacaatagtagccatttcttccaaacaccatgttgactcagcatatctttct |
35177855 |
T |
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| Q |
114 |
gagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaa |
213 |
Q |
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| T |
35177856 |
gagaagacaacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaa |
35177955 |
T |
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| Q |
214 |
aaataccctttctttttagatgagc |
238 |
Q |
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||||||| |||||| |||||||||| |
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| T |
35177956 |
aaataccttttcttgttagatgagc |
35177980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 59 - 238
Target Start/End: Original strand, 35169510 - 35169689
Alignment:
| Q |
59 |
ttcagcaatagtagccatctcttccaaacaccacgttgaatcggcatatctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtaga |
158 |
Q |
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|||| |||| |||||||| |||||||||||||| ||||| || |||||||||| |||||||||||||||||||| | |||| || |||||||||| || |
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| T |
35169510 |
ttcaacaatggtagccatttcttccaaacaccatgttgactcagcatatctttctgagaagacaacaatagaaatccgtgaatttgtaattgcttgtcga |
35169609 |
T |
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| Q |
159 |
agttgcggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagc |
238 |
Q |
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| T |
35169610 |
tgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacaccctttctagttagatgagc |
35169689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 25484514 - 25484341
Alignment:
| Q |
65 |
aatagtagccatctcttccaaacaccacgttgaatcggcata-tctttgagagaagacaacaatagaaattcttgaactttgaattgcttgtagaagttg |
163 |
Q |
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||||| |||||| || ||||||||||| |||||| ||||| |||||| ||||| ||||| |||||||| | ||| ||||||||||||||||||||| |
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| T |
25484514 |
aatagcagccatttcatccaaacaccatgttgaagaagcataatctttg-gagaaaacaacgatagaaatgcgtgactgttgaattgcttgtagaagttg |
25484416 |
T |
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| Q |
164 |
cggtgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaataccctttctttttagatgagc |
238 |
Q |
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| T |
25484415 |
gggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagc |
25484341 |
T |
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