View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2169_high_5 (Length: 252)
Name: NF2169_high_5
Description: NF2169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2169_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 2259120 - 2259354
Alignment:
| Q |
1 |
ttaaaacaattagcaacttaactttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttc |
100 |
Q |
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| T |
2259120 |
ttaaaacaattagcaacttaactttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttc |
2259219 |
T |
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| Q |
101 |
atggaatggtttaatatttgcagtgagagaaattgatggaactcttgtttggaaaaagaatttgacaaaattaactggtctagattcaataggttttatt |
200 |
Q |
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| T |
2259220 |
atggaatggtttaatatttgcagtgagagaaattgatggaactcttgtttggaaaaagaatttgacaaaattaactggtctagattcaataggttttatt |
2259319 |
T |
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| Q |
201 |
gcaaatgttaattggacagtggctagggcaacacc |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2259320 |
gcaaatgttaattggacagtggctagggcaacacc |
2259354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 154
Target Start/End: Complemental strand, 2229956 - 2229825
Alignment:
| Q |
23 |
tttgaagtgggaattcaatgcaggcaaagacataactgcaacaccagcaattttcaatggaacaatatattttccttcatggaatggtttaatatttgca |
122 |
Q |
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|||||||||| ||||||||||||||||||| || || ||||||||| |||| | |||||| ||||| |||||||| | ||||||||| |||| |||| |
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| T |
2229956 |
tttgaagtggaaattcaatgcaggcaaagatattacagcaacaccaacaatatacaatggtacaatttattttccatgctggaatggtaacatatatgca |
2229857 |
T |
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| Q |
123 |
gtgagagaaattgatggaactcttgtttggaa |
154 |
Q |
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| T |
2229856 |
attaaacaaattgatggatcacttgtttggaa |
2229825 |
T |
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