View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2169_high_6 (Length: 219)
Name: NF2169_high_6
Description: NF2169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2169_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 43097119 - 43097307
Alignment:
| Q |
14 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
113 |
Q |
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| T |
43097119 |
caaagggttgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcaaaagactggctctgaacctaccctctcagtttatagaaca |
43097218 |
T |
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| Q |
114 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaa |
202 |
Q |
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| T |
43097219 |
cttatgacttgtttatgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaa |
43097307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 6779642 - 6779830
Alignment:
| Q |
14 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
113 |
Q |
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||||||||||||||| ||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
6779642 |
caaagggctgttcatggttgatagagaagatgaggcatttaaggtttttcaacgtatgcagaagactggctctgaacctaccctttcagtttatagaaca |
6779741 |
T |
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| Q |
114 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaa |
202 |
Q |
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| T |
6779742 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgtgcattcactctttatttggaacatttgaagagccttcctagtcgggacaa |
6779830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 17487436 - 17487248
Alignment:
| Q |
14 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
113 |
Q |
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||||||||||||||| ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17487436 |
caaagggctgttcatggttgacagagaagatgaggcatttaaggtttttcaacgtatgcagaagactggctctgaacctaccctttcagtttatagaaca |
17487337 |
T |
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| Q |
114 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaa |
202 |
Q |
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| T |
17487336 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgtgcattcactctttatttcgaacatttgaagagccttcctagtcgggacaa |
17487248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 202
Target Start/End: Original strand, 22424214 - 22424402
Alignment:
| Q |
14 |
caaagggctgttcatagttgacagagaagatgatgcctttaaggtttttcagcgtatgcagaagactggctctgaacctaccctctcagtttatagaaca |
113 |
Q |
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||||||| ||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
22424214 |
caaagggttgttcatggttgatagagaagatgaggcatttaaggtttttcaacgtatgcagaagactagctctgaacctaccctttcagtttatagaaca |
22424313 |
T |
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| Q |
114 |
cttatgacttgtttgtgtagaaagagcaaggtctcacgggcattcactctttatttggaatatttgaagagccttcctagtcgggacaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22424314 |
cttatgacttgtttgtgtagaaagagcaaggtctcatgtgcattcactctttatttggaacatttgaagagccttcctagtcgggacaa |
22424402 |
T |
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