View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2169_high_7 (Length: 216)

Name: NF2169_high_7
Description: NF2169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2169_high_7
NF2169_high_7
[»] chr2 (7 HSPs)
chr2 (24-195)||(2329800-2329971)
chr2 (32-203)||(2326093-2326264)
chr2 (32-195)||(2320239-2320402)
chr2 (32-201)||(2292919-2293088)
chr2 (32-195)||(2309250-2309413)
chr2 (56-195)||(2302562-2302701)
chr2 (35-195)||(2350111-2350271)


Alignment Details
Target: chr2 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 24 - 195
Target Start/End: Original strand, 2329800 - 2329971
Alignment:
Q  24 atataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaa 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2329800 atataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaa 2329899  T
Q  124 tcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 195  Q
    |||||||||||| ||  |||||||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  2329900 tcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaa 2329971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 2326093 - 2326264
Alignment:
Q  32 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 131  Q
    |||||||||||||| |||||||| |||||||||||  |||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  2326093 atcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcaatcttaata 2326192  T
Q  132 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatctc 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2326193 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaattcatctc 2326264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 2320239 - 2320402
Alignment:
Q  32 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 131  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2320239 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata 2320338  T
Q  132 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 195  Q
    |||| ||  |||||||||||| ||||  ||||| ||||||||| ||||| | ||||||||||||    
T  2320339 tcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 2320402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 32 - 201
Target Start/End: Original strand, 2292919 - 2293088
Alignment:
Q  32 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 131  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2292919 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactgtccata 2293018  T
Q  132 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaattcatc 201  Q
    |||| ||  |||||||||||| |||   ||||| | ||||||||||||| | |||||||||||| |||||    
T  2293019 tcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatc 2293088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 2309250 - 2309413
Alignment:
Q  32 atcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaata 131  Q
    |||||||||| | |||||| ||| | ||||||| || |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| | |  |||    
T  2309250 atcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattgtccata 2309349  T
Q  132 tcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 195  Q
    |||| ||   ||||||||||| ||||  ||||| ||||||||| ||||| | ||||||||||||    
T  2309350 tcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaa 2309413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 2302562 - 2302701
Alignment:
Q  56 cgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcggctccagaccttccatttaca 155  Q
    |||||| ||| | |||| |||||||||||||||| |||||| ||||||||||||||||||||||||| |||  | ||||| ||  |||||||||||| ||    
T  2302562 cgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccattttca 2302661  T
Q  156 tctccgaccgtgctctggcccaccacgctctcgttcaaaa 195  Q
    ||   |||| ||||||||||||||| | ||||||||||||    
T  2302662 tcgatgaccatgctctggcccaccatgttctcgttcaaaa 2302701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 2350111 - 2350271
Alignment:
Q  35 atcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtcctatcatcaatcttaatatcg 134  Q
    |||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| ||| || ||  ||||| ||||||||||||||| ||| || |||     
T  2350111 atcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatca 2350210  T
Q  135 gctccagaccttccatttacatctccgaccgtgctctggcccaccacgctctcgttcaaaa 195  Q
    | | | |||||||||||| ||||||||||| | |||| |||||||||||||||||||||||    
T  2350211 gttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa 2350271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University