View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2169_low_2 (Length: 394)
Name: NF2169_low_2
Description: NF2169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2169_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 34 - 337
Target Start/End: Complemental strand, 6434479 - 6434176
Alignment:
| Q |
34 |
gtattgcaaattgtcgtgatttgaagtaccagtacaatgatgatgttcaagaaagacatggttgtggacatacacatacgtagctctttaaagagaggct |
133 |
Q |
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| T |
6434479 |
gtattgcaaattgtcgtgatttgaagtaccagtacaatgatgatgttcaagaaagacatggttgtggacatacacatacgtaactctttaaagagaggct |
6434380 |
T |
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| Q |
134 |
gacaaatgcttccatttggatgaaaatttatgaaattttgttaccaagtatagtcatgatttcagaaaaattgtcctgtgaagcaaaaaatatcgattan |
233 |
Q |
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| T |
6434379 |
gacaaatgcttccatttggatgaaaatttatgaaattttgttaccaagtatagtcatgatttcagaaaatttgtcctgtgaagcaaaaattatcgattat |
6434280 |
T |
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| Q |
234 |
nnnnnnacacaacttaggagccagccaatacaaatattatgttttttcccttcctaaaacaaaatataatgtttttacagatacatataagttatttttc |
333 |
Q |
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| T |
6434279 |
ttttttacacaacttaggagccagccaatacaaatattatgttttttcccttcctaaaacaaaatataatgtttttacagatacatataagttatttttc |
6434180 |
T |
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| Q |
334 |
ttga |
337 |
Q |
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|||| |
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| T |
6434179 |
ttga |
6434176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 6434158 - 6434119
Alignment:
| Q |
351 |
gcgttttaaaaaacatagaccacctccattcatctcactc |
390 |
Q |
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| T |
6434158 |
gcgttttaaaaaacatagaccacctacattcatctcactc |
6434119 |
T |
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