View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2169_low_3 (Length: 358)
Name: NF2169_low_3
Description: NF2169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2169_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 22 - 347
Target Start/End: Original strand, 38184620 - 38184945
Alignment:
| Q |
22 |
cgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaac |
121 |
Q |
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| T |
38184620 |
cgacaacaccaccaccagacgaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaac |
38184719 |
T |
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| Q |
122 |
atcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttctttgaaa |
221 |
Q |
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| T |
38184720 |
atcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactgtagggttggtttcttcatctagaacttgaatttgttctttgaaa |
38184819 |
T |
|
| Q |
222 |
gattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatg |
321 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38184820 |
gatcgagtagcgatagtatatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatattgaacatg |
38184919 |
T |
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| Q |
322 |
tttcatcctttgatttgtttgtgatg |
347 |
Q |
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|||||||||||||||||||||||||| |
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| T |
38184920 |
tttcatcctttgatttgtttgtgatg |
38184945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 38179944 - 38180274
Alignment:
| Q |
15 |
tcaaccccgacaacaccaccaccagacaaagtatcattaggatctttaccgcccaagaaagcatatggaatcaatggtccgattggtatcattttgatct |
114 |
Q |
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||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38179944 |
tcaacaccgacaacaccaccactagacgaagtatcattaggatctttaccgcccaagaaagtatatggaatcaatggtccgattggtatcattttgatct |
38180043 |
T |
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| Q |
115 |
taccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatctagaacttgaatttgttc |
214 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38180044 |
taccaacgtcaacggcttttagtgcctctaattcaaactcttcaacggtgttaacaagtactttagggttggtttcttcatatagaacttgaatttgttc |
38180143 |
T |
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| Q |
215 |
tttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacgactttcaagagagaatgacaatcctggtaatgatatt |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38180144 |
tttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaagagggaaggtcacggctttcaagagagaatgacaatcctggtaatgatatt |
38180243 |
T |
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| Q |
315 |
gaacatgtttcatcctttgatttgtttgtga |
345 |
Q |
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| T |
38180244 |
gaacatgtttcatcctttgatttgtttgtga |
38180274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 67 - 347
Target Start/End: Original strand, 38170182 - 38170462
Alignment:
| Q |
67 |
ccaagaaagcatatggaatcaatggtccgattggtatcattttgatcttaccaacatcaacggcttttagtgcctctaattcaaactcttcaacggtgtt |
166 |
Q |
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||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| || | ||||||||| ||||||||||| |
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| T |
38170182 |
ccaagaaagcagatggaatcaacggtccgatgggtatcattttgatcttaccaacatcaactttattcagtgcatccagttcaaactcctcaacggtgtt |
38170281 |
T |
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| Q |
167 |
aacaagtactttagggttggtttcttcat-ctagaacttgaatttgttctttgaaagattgagtagcgatagtgtatatatttgaagataataaaaaaga |
265 |
Q |
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||||||||| | |||||| ||||||||| | | |||| ||||||| ||||||| |||| || ||| | ||||||| ||||||||| ||||||||||| |
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| T |
38170282 |
cacaagtactcttgggttgatttcttcattcaacaact-gaatttgctctttgagagatggaagagcaaaagtgtatgtatttgaagccaataaaaaaga |
38170380 |
T |
|
| Q |
266 |
gggaaggtcacgactttcaagagagaatgacaatcctggtaatgatattgaacatgtttcatcctttgatttgtttgtgatg |
347 |
Q |
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||||||||| || |||| |||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
38170381 |
gggaaggtcgcggcttttaagagagaatgacaatcccggtaatgatattaaacacgtttcatcctttgatttgtttgtgatg |
38170462 |
T |
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