View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21700_high_1 (Length: 350)
Name: NF21700_high_1
Description: NF21700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21700_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 30 - 286
Target Start/End: Complemental strand, 40513501 - 40513245
Alignment:
| Q |
30 |
gttagatcatttggagatttgttttacatagttcagatttgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaac |
129 |
Q |
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| T |
40513501 |
gttagatcatttggagatttgttttacatagttcagatttgtatgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaac |
40513402 |
T |
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| Q |
130 |
ttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagactttattgccgcattgcctcttcctcaggtacatatgagtct |
229 |
Q |
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| T |
40513401 |
ttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagactttattgccgcattgcctcttcctcaggtacctatgagtct |
40513302 |
T |
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| Q |
230 |
gtttgtttatgtttaaaaggccactttggtccttgaatgtgtcagatattgtcccta |
286 |
Q |
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| T |
40513301 |
gtttgtttatgtttaaaaggccgctttggtccttgaatgtgtcagatattgtcccta |
40513245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 89 - 286
Target Start/End: Complemental strand, 40482768 - 40482571
Alignment:
| Q |
89 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagac |
188 |
Q |
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| T |
40482768 |
ttatgttgctccttcttccaaggtttttggtagaggagaacttgttcttacctattctaagattgctcttaggtacttcagcaagggtttttggttagac |
40482669 |
T |
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| Q |
189 |
tttattgccgcattgcctcttcctcaggtacatatgagtctgtttgtttatgtttaaaaggccactttggtccttgaatgtgtcagatattgtcccta |
286 |
Q |
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| T |
40482668 |
tttattgccgcattgcctcttcctcaggtacctatgagtctgtttgtttatgtttaaaaggccgctttggtccttgaatgtgtcagatattgtcccta |
40482571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 21611803 - 21611865
Alignment:
| Q |
72 |
atgaagtttcgtacagcttatgttgctccttcttccaaggtttttggtagaggagaacttgtt |
134 |
Q |
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| T |
21611803 |
atgaggtttcatacggcatatgttgcaccttcttctagggtttttgggagaggagaacttgtt |
21611865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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