View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21701_high_2 (Length: 485)
Name: NF21701_high_2
Description: NF21701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21701_high_2 |
 | |
|
| [»] chr8 (10 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 4 - 485
Target Start/End: Complemental strand, 2023098 - 2022620
Alignment:
| Q |
4 |
aaagttacctgtagaagatcaccaatgttgatgactagagcaccaggaacaggtgatacatcaacccaactattttcaagaagaacttggaggccgccaa |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2023098 |
aaagttacctgtagaagatcaccaatgttgatgactagagcaccaggaacaggtgatacatcaacccaactattttcacgaagaacttggaggccgccaa |
2022999 |
T |
|
| Q |
104 |
tatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaac |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2022998 |
tatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttattcccaaagtcaattctggttctggacaggaaggatagtaatggcaaac |
2022899 |
T |
|
| Q |
204 |
aagtgcaagtccttcattgcatctcatttcattcaaatagtttggatcaagtccaagtgcttctgataataactcaaacaatagatttcccagtttcata |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2022898 |
aagtgcaagtccttcattgcatctcatttcattcaaatagtttggatcaagtccaagtgcttctgataataactcaaacaatagatttcccagtttcata |
2022799 |
T |
|
| Q |
304 |
acttgttttgtgtattccaacattatatctctgcttctccactgtgcacataatatcctaaagctttaatcacaactattatcaaaatgtactacacaga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2022798 |
acttgttttgtgtattccaacattatatctctgc--aagca-tgtgcacataatatcctaaagctttaatcacaactattatcaaaatgtactacacaga |
2022702 |
T |
|
| Q |
404 |
tatgaaatgattgaatgtggctcataggttaccgataagtggacaagtcgctcaagcgcgggacataatttagggataattt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2022701 |
tatgaaatgattgaatgtggctcataggttaccgataagtggacaagtcgctcaagcgcgggacataatttagggataattt |
2022620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 84 - 197
Target Start/End: Complemental strand, 10768618 - 10768505
Alignment:
| Q |
84 |
aagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacag |
183 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| |||| || || ||||| | ||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
10768618 |
aagaacttggaggccaccaatatggtcttggagaagcacagtgaggaaatcattatcagaatgcttggttgttcccacagtcaattctggttcaggacaa |
10768519 |
T |
|
| Q |
184 |
gaaggatagtaatg |
197 |
Q |
| |
|
| |||||| ||||| |
|
|
| T |
10768518 |
ggaggataataatg |
10768505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 2029638 - 2029476
Alignment:
| Q |
40 |
agagcaccaggaacaggtgatacatcaacccaactattttcaagaagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttat |
139 |
Q |
| |
|
||||| ||||| ||||||| || ||||| ||| ||| |||| ||||||||||||||| |||||||| ||||| |||||||| |||| || || || | |
|
|
| T |
2029638 |
agagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggaggccaccaatatggtcttggagaagcactgtgaggaaatcattgt |
2029539 |
T |
|
| Q |
140 |
ccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
202 |
Q |
| |
|
| |||||| |||||||||| ||||||||||||||| ||||| | |||||| |||||||||| |
|
|
| T |
2029538 |
cacaatgctttgttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
2029476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 2050885 - 2050767
Alignment:
| Q |
84 |
aagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacag |
183 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| |||| || || ||||| | |||||| |||||||| | ||||||||||||||| ||||| |
|
|
| T |
2050885 |
aagaacttggaggccaccaatatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaa |
2050786 |
T |
|
| Q |
184 |
gaaggatagtaatggcaaa |
202 |
Q |
| |
|
| |||||| |||||||||| |
|
|
| T |
2050785 |
ggaggataataatggcaaa |
2050767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 84 - 202
Target Start/End: Complemental strand, 2055294 - 2055176
Alignment:
| Q |
84 |
aagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacag |
183 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| |||| || || ||||| | |||||| |||||||| | ||||||||||||||| ||||| |
|
|
| T |
2055294 |
aagaacttggaggccaccaatatggtcttgaagaagcactgtgaggaaatcattatcagaatgctttgttgttccgacagtcaattctggttcaggacaa |
2055195 |
T |
|
| Q |
184 |
gaaggatagtaatggcaaa |
202 |
Q |
| |
|
| ||| ||||||||||||| |
|
|
| T |
2055194 |
ggagggtagtaatggcaaa |
2055176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 2058162 - 2058000
Alignment:
| Q |
40 |
agagcaccaggaacaggtgatacatcaacccaactattttcaagaagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttat |
139 |
Q |
| |
|
||||| ||||| ||||||| || ||||| ||| ||| |||| |||||||||||| || |||||||| ||||||||||||| || | || || |||| |
|
|
| T |
2058162 |
agagctccaggtacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaatatggtcttgtagaagcattgtcaggaaatcattat |
2058063 |
T |
|
| Q |
140 |
ccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
202 |
Q |
| |
|
| | ||||||||||||||||| ||||||||||||||| ||| | |||||||| ||||| |||| |
|
|
| T |
2058062 |
cagaatgcttggttgttcccacagtcaattctggttcgggataagaaggataataatgacaaa |
2058000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 204
Target Start/End: Original strand, 1948561 - 1948681
Alignment:
| Q |
84 |
aagaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacag |
183 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||| |||| ||| | || | |||||| |||||||||| ||||| ||||||||| ||||| |
|
|
| T |
1948561 |
aagaacttggagaccaccaatatggtcttgtagaagcactgtgagaaaactatggtctgaatgcttagttgttcccatagtcagttctggttcaggacaa |
1948660 |
T |
|
| Q |
184 |
gaaggatagtaatggcaaaca |
204 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
1948661 |
gaaggataataatggcaaaca |
1948681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 2037790 - 2037599
Alignment:
| Q |
11 |
cctgtagaagatcaccaatgttgatgactagagcaccaggaacaggtgatacatcaacccaactattttcaagaagaacttggaggccgccaatatgatc |
110 |
Q |
| |
|
|||| |||||||||||||| || | | ||||| |||| ||||||| || ||||| ||| ||| |||| |||||||||||| || |||||||| || |
|
|
| T |
2037790 |
cctgcagaagatcaccaatattaactatgagagctccagatacaggtgttatatcaatccatttatcttcataaagaacttggagaccaccaatatggtc |
2037691 |
T |
|
| Q |
111 |
ttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
202 |
Q |
| |
|
||| | |||||| |||| ||| | | || | |||||||| |||||||| ||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
2037690 |
ttggataagcactgtgagaaaaccatggtctgaatgcttggctgttcccacagtcaattctggttccggacaagaaggataataatggcaaa |
2037599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 85 - 202
Target Start/End: Complemental strand, 2034152 - 2034035
Alignment:
| Q |
85 |
agaacttggaggccgccaatatgatcttgtagaagcacggtgataaagtcgttatccgtatgcttggttgttcccaaagtcaattctggttctggacagg |
184 |
Q |
| |
|
|||||||| || || |||| ||| |||||||||||||| |||| || || ||||| | |||||| |||||||| | ||||||||||||||| ||||| | |
|
|
| T |
2034152 |
agaacttgaagaccaccaacatggtcttgtagaagcactgtgaggaaatcattatcagaatgctttgttgttcctacagtcaattctggttcaggacaag |
2034053 |
T |
|
| Q |
185 |
aaggatagtaatggcaaa |
202 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
2034052 |
gagggtagtaatggcaaa |
2034035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 2046907 - 2046852
Alignment:
| Q |
147 |
cttggttgttcccaaagtcaattctggttctggacaggaaggatagtaatggcaaa |
202 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||| | |||||| |||||||||| |
|
|
| T |
2046907 |
cttggttgttcccacagtcaattctggttcaggacaaggaggataataatggcaaa |
2046852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 16425973 - 16426018
Alignment:
| Q |
83 |
gaagaacttggaggccgccaatatgatcttgtagaagcacggtgat |
128 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
16425973 |
gaagaacttggaggccacctatatgatcttgtagaagcactgtgat |
16426018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 16442251 - 16442296
Alignment:
| Q |
83 |
gaagaacttggaggccgccaatatgatcttgtagaagcacggtgat |
128 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
16442251 |
gaagaacttggaggccacctatatgatcttgtagaagcactgtgat |
16442296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University