View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21701_high_3 (Length: 401)
Name: NF21701_high_3
Description: NF21701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21701_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 2 - 388
Target Start/End: Complemental strand, 51011914 - 51011534
Alignment:
| Q |
2 |
agtctctctactttttgggatatacagggggaaaaaagaaaagaaagagacatggatttaaatggcacataaaaattgttatcttgtaacaataacgaac |
101 |
Q |
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| T |
51011914 |
agtctctctactttttgggatataaagggg-aaaaaagaaaagaaagagacatggatttaaatgccacataaaaattgttatcttgtaacaataacgaat |
51011816 |
T |
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| Q |
102 |
ttggatcatctccatccatttctctattcactctttatgtatgtatacaagagagatagaaatatttatacaagaaaagtgaaaggtgagtatcaaattt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51011815 |
ttggatcatctccatccatttctctattcactctttatgtatatgagagagagagatagaaatatttatacaagaaaagtgaagggtgagtatcaaattt |
51011716 |
T |
|
| Q |
202 |
caacaacacatttgaaattgcgtaatttatttgcacattattatg----cttaggttggtaacaacctcttcaattatttccactaggctttccaaagta |
297 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51011715 |
caacaacacatttgaaattgggtaatttatttgcacattattatgcttacttaggttggtaacaacctcttcaattatttccactagactttccaaagta |
51011616 |
T |
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| Q |
298 |
ttgattgaacattgtnnnnnnnnnnnnnnnnnnngcaattatggaaagtttaactactgaaactgcatcaattttctctgatgatgatgtc |
388 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
51011615 |
ttgattgaacattgt---------aaaaaaaagagcaattatggaaagtttaactactgaaactgcatcaattttctctgatgttgatgtc |
51011534 |
T |
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