View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21701_high_5 (Length: 371)
Name: NF21701_high_5
Description: NF21701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21701_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 24242308 - 24241982
Alignment:
| Q |
1 |
tacacgagtataagttacgactaatttaaaaaatcaatacacgagaaaacctcaaatttcactcgcaactaagcaa-gaggaaacttggagtatcacaca |
99 |
Q |
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| T |
24242308 |
tacacgagtacaagttacgattaatttaaaaaatcaatacacgattaaacctcaaatttcactcgcaactaagcaatgaggaaacttggagtatcacaca |
24242209 |
T |
|
| Q |
100 |
agtattgaatacctagtacctggtacatgtacttcacctttttacaaatggaaaatgctacttttcatgaaaattcttttcacgacaacatcccgatggt |
199 |
Q |
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| T |
24242208 |
agtattgaatacctagtacctggtacaagtacttcacctttttacaaatggaaaatgctacttatcatgaaaattcttttcacgacaacatcccgatggt |
24242109 |
T |
|
| Q |
200 |
acaattttaatatctttctaaaccattttatttccaaccacccatgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttctcg |
299 |
Q |
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| T |
24242108 |
acaattttaatatctttctacaccattttatttccaaccacccatgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttctcg |
24242009 |
T |
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| Q |
300 |
gcatgttttctttcgcgatcaatagca |
326 |
Q |
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| T |
24242008 |
gcatgttttctttcgcgatcaatagca |
24241982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 149 - 326
Target Start/End: Original strand, 3855443 - 3855627
Alignment:
| Q |
149 |
ggaaaatgctacttttcatgaaaattcttttcacgacaacatcccgatgg-------tacaattttaatatctttctaaaccattttatttccaaccacc |
241 |
Q |
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| T |
3855443 |
ggaaaatgctatttatcacaagaattcctttcacgacaacatcccgatggacgacggtaaaattttaatatctttctacatcattttatttcaaaccacc |
3855542 |
T |
|
| Q |
242 |
catgtattttaattaaaggcctagatcaaacggttcaaaatcattcgcgatgttctcggcatgttttctttcgcgatcaatagca |
326 |
Q |
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| T |
3855543 |
catgtattgtaattaaaggtctagatcaaacggttcaaaatcattcgcgatgttcttggcatgttttctttcgcgatcaatagca |
3855627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 171 - 326
Target Start/End: Complemental strand, 47915811 - 47915666
Alignment:
| Q |
171 |
aattcttttcacgacaacatcccgatggtacaattttaatatctttctaaaccattttatttccaaccacccatgtattttaattaaaggcctagatcaa |
270 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||| |||||| |||| |||||||||||| ||||||| |||||||||||||| | |
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| T |
47915811 |
aattcttttcacgagaacatccggatcgtacaattttaatatatttctacaccactttatttccaactacccatg---------taaaggcctagatcta |
47915721 |
T |
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| Q |
271 |
acggttcaaaatcattcgcgatgttctcggcatgttttctttcgcgatcaatagca |
326 |
Q |
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| T |
47915720 |
acggttcagaatcattc-agatgttctcgacatgttttctttcgcggtcaatagca |
47915666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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