View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21701_high_7 (Length: 331)
Name: NF21701_high_7
Description: NF21701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21701_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 29471036 - 29470749
Alignment:
| Q |
17 |
gatgcaattgagaattaaagagaagtaagtaaaataacaagagaaataacacacatgatttacgtgaaaaactcctcaatatgagaagtaaaaaaccacg |
116 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||||||||||||||||||| |||||||||||| |
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| T |
29471036 |
gatgaaattgagaattaaagagaagtaagtaaaataacaagagaaaaaacacacaagatttacatggaaaactcctcaatatgagaactaaaaaaccacg |
29470937 |
T |
|
| Q |
117 |
ggcgatcacgagcaaagttccactatatatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatc |
216 |
Q |
| |
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|||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
29470936 |
ggcgatcaagagcaaagttccactat----gtaaaagaaaagagtatagcaagtcctcttatagtaatgaggacaaaggacaatattttctctcaatatc |
29470841 |
T |
|
| Q |
217 |
tcctaaaatactctctaaaatggaacaagaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggttttgtgat |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |||||| |
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| T |
29470840 |
tcctaaaatactctctaaaatggaacaagaattctcaccaaaaatacacttaagtgtatgttacaaagtgtgtttgtaattggttatgtgat |
29470749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 22 - 308
Target Start/End: Original strand, 3076305 - 3076587
Alignment:
| Q |
22 |
aattgagaattaaagagaagtaagtaaaataacaagagaaataacacacatgatttacgtgaaaaactcctcaatatgagaagtaaaaaaccacgggcga |
121 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||||| |
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| T |
3076305 |
aattgagaattaaagagaagtaagtaaaataacaagagaaataacacacaagatttacatggaaaactcctaaatatgagaagtaaaaaaccacgggcga |
3076404 |
T |
|
| Q |
122 |
tcacgagcaaagttccactatatatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctccta |
221 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
3076405 |
ttgagagcaaagttccactatata----aaagaaaagagtacaacaagtcttcttatagtgatgaggacaaatgacaaaattttctctcaatatctccta |
3076500 |
T |
|
| Q |
222 |
aaatactctctaaaatggaacaagaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggttttgtgat |
308 |
Q |
| |
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|||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
3076501 |
aaatactctctaaaatggaacaagaattcttactaaaaatacactcaagtgtatgttacaaagtgtgtttgtaattggttttgtgat |
3076587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 60 - 305
Target Start/End: Original strand, 3072818 - 3073059
Alignment:
| Q |
60 |
aaataacacacatgatttacgtgaaaaactcctcaatatgagaagtaaaaaaccacgggcgatcacgagcaaagttccactatatatgtaaaagaaaaga |
159 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
3072818 |
aaataacacacaagatttacgtggaaaactcctcaatatgagaagtaaaaaaccacgggcgatcgagagcaaagttccactat----gtaaaagaaaaga |
3072913 |
T |
|
| Q |
160 |
gtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatctcctaaaatactctctaaaatggaacaagaattctcaccaaaa |
259 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
3072914 |
gtacaacaagtcctcttatagtgatgaggacaaaggacaaaattttctctcaatatctcctaaaatactctcgaaaatggaacaagaattctcactaaaa |
3073013 |
T |
|
| Q |
260 |
atacactcaagtgcatgttacaaagtgcgtttgtaattggttttgt |
305 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
3073014 |
atacactcaagtgtatgttacaaagtgtgtttgtaattggttttgt |
3073059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 15114220 - 15113961
Alignment:
| Q |
17 |
gatgcaattgagaattaaagagaagtaagtaaaataacaagagaaataacacacatgatttacgtgaaaaactcctcaatatgagaagtaaaaaaccacg |
116 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||| |
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| T |
15114220 |
gatgctattgagaattaaagagaagtaagtaaaataacaagagaaataacacacaagatttacgtgga------ctcaatatgagaagtaaaaaaccacg |
15114127 |
T |
|
| Q |
117 |
ggcgatcacgagcaaagttccactatatatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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|
| T |
15114126 |
ggcgatcacgagcaaagttccactat----gtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaggacaatattttctcccaatatc |
15114031 |
T |
|
| Q |
217 |
tcctaaaatactctctaaaatggaacaagaattctcaccaaaaatacactcaagtgcatgttacaaagtg |
286 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
15114030 |
tcctaaaatactctctcaaatggaacaagaattctcaccaaaagtacactcaagtgtatgttacaaagtg |
15113961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 15241524 - 15241792
Alignment:
| Q |
17 |
gatgcaattgagaattaaagagaagtaagtaaaataacaagagaaataacacacatgatttacgtgaaaaactcctcaatatgagaagtaaaaaaccacg |
116 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||| | |
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| T |
15241524 |
gatgcaattgagaatcaaagagaagtaagtaaaataataagagaaataacacacaagatttacgtggaaaactcctcaatatgagaag--aaaaaccatg |
15241621 |
T |
|
| Q |
117 |
ggcgatcacgagcaaagttccactatatatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatatc |
216 |
Q |
| |
|
|| | ||||||||||||||||||||| ||||||||||| ||||||| || ||||||| |||||||||||||||| |||||||||||||||||||||| |
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|
| T |
15241622 |
ggtggtcacgagcaaagttccactat----gtaaaagaaaaaagtacaataaatcctcttgtagtaatgaggacaaaggacaatattttctcttaatatc |
15241717 |
T |
|
| Q |
217 |
tcctaaaatactctctaaaatggaacaagaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgttt |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |
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|
| T |
15241718 |
tcctaaaatactctctaaaatggaacaagaattctcacaaaaaatacactcaagtgtatgttacaaagtgtgttt |
15241792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 303
Target Start/End: Original strand, 8564830 - 8565113
Alignment:
| Q |
17 |
gatgcaattgagaattaaagagaagtaagtaaaataacaagagaaat-aacacacatgatttacgtgaaaaactcctcaatatgagaagtaaaaaaccac |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
8564830 |
gatgctattgagaattaaagagaagtaagtaaaataacaagagaaattaacacacaagatttacgttgaaaactcctcaatatgagaagtaaaaaaccat |
8564929 |
T |
|
| Q |
116 |
gggcgatcacgagcaaagttccactatatatgtaaaagaaaagagtacaacaagtcctcttatagtaatgaggacaaaagacaatattttctcttaatat |
215 |
Q |
| |
|
|| || |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||| || ||||| |
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|
| T |
8564930 |
ggacggtcacgaataaagttccactat----gtaaaagaaaagagtacaacaagtcctcttatagtgatgaggacaaaggataatattttcactcaatat |
8565025 |
T |
|
| Q |
216 |
ctcctaaaatactctctaaaatggaacaagaattctcaccaaaaatacactcaagtgcatgttacaaagtgcgtttgtaattggtttt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
8565026 |
ttcctaaaatactctctaaaatggaacaagaattctcacaaaaaatacacccaagtgtatgttacaaagtgtgtttgtaattggtttt |
8565113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 23043835 - 23043804
Alignment:
| Q |
17 |
gatgcaattgagaattaaagagaagtaagtaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23043835 |
gatgcaattgagaattaaagagaagtaagtaa |
23043804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 23048190 - 23048159
Alignment:
| Q |
17 |
gatgcaattgagaattaaagagaagtaagtaa |
48 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23048190 |
gatgcaattgagaattaaagagaagtaagtaa |
23048159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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