View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21701_high_9 (Length: 324)
Name: NF21701_high_9
Description: NF21701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21701_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 24 - 280
Target Start/End: Complemental strand, 53367299 - 53367043
Alignment:
| Q |
24 |
aaatgtaaatgtaaatgctttttaccgctgggatggttctactaatgaaaaggcttctgtggatgctgttgctgttaacaaagacaaagattacgcaata |
123 |
Q |
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| T |
53367299 |
aaatgtaaatgtaaatgctttttaccgttgggatggttctactaatgaaaaggcttctgtggatgctgttgccgttaacaaagacagagattacgcaata |
53367200 |
T |
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| Q |
124 |
gaaataaaagcagatgccgattctagaaatagtgatgatgtagtttatcaaacagatacaacaactagtacaaggaagacatggagtcctccacctaatt |
223 |
Q |
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| T |
53367199 |
gaaataaaagcagatgccgattctagaaatagtgatgatgtagtttatcaaacagatacaacaactagtacaaggaagacatggagtcctccacctaatt |
53367100 |
T |
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| Q |
224 |
atgctgctttaagaattgtaattgctgatgaagatgagcagggaaatcaacttacac |
280 |
Q |
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| T |
53367099 |
atgctgctttaagaattgtaattgctgatgaagatgagcagggaaatcaacttacac |
53367043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 40
Target Start/End: Complemental strand, 53367320 - 53367289
Alignment:
| Q |
9 |
tagcaaagaagatgaaaatgtaaatgtaaatg |
40 |
Q |
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| T |
53367320 |
tagcaaagaagatgaaaatgtaaatgtaaatg |
53367289 |
T |
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