View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21702_high_2 (Length: 262)

Name: NF21702_high_2
Description: NF21702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21702_high_2
NF21702_high_2
[»] scaffold0036 (1 HSPs)
scaffold0036 (187-242)||(35691-35746)
[»] chr8 (8 HSPs)
chr8 (192-243)||(8343395-8343446)
chr8 (192-241)||(8343037-8343086)
chr8 (192-235)||(4673354-4673397)
chr8 (192-243)||(22197671-22197722)
chr8 (193-240)||(24205749-24205796)
chr8 (191-241)||(16641908-16641958)
chr8 (192-242)||(36450694-36450744)
chr8 (127-160)||(26414970-26415003)
[»] scaffold0003 (1 HSPs)
scaffold0003 (192-242)||(236914-236964)
[»] chr1 (14 HSPs)
chr1 (191-241)||(43113004-43113054)
chr1 (192-241)||(29144320-29144369)
chr1 (188-243)||(1486640-1486695)
chr1 (192-243)||(6427543-6427594)
chr1 (192-235)||(31694639-31694682)
chr1 (192-241)||(15765828-15765877)
chr1 (192-243)||(9690213-9690264)
chr1 (129-160)||(44651843-44651874)
chr1 (187-242)||(46940743-46940798)
chr1 (191-221)||(17408792-17408822)
chr1 (191-232)||(16812635-16812676)
chr1 (192-245)||(34741913-34741965)
chr1 (191-240)||(47989579-47989628)
chr1 (193-241)||(9103693-9103741)
[»] chr2 (11 HSPs)
chr2 (192-240)||(11223793-11223841)
chr2 (25-59)||(21926570-21926604)
chr2 (204-243)||(14996171-14996210)
chr2 (192-243)||(20242667-20242718)
chr2 (192-243)||(35056947-35056998)
chr2 (192-242)||(37419823-37419873)
chr2 (196-241)||(8164552-8164597)
chr2 (192-241)||(12748737-12748786)
chr2 (192-233)||(22084756-22084797)
chr2 (191-235)||(15907850-15907894)
chr2 (191-243)||(38117098-38117150)
[»] chr7 (4 HSPs)
chr7 (197-243)||(13770764-13770810)
chr7 (192-243)||(5409771-5409822)
chr7 (192-243)||(43027404-43027455)
chr7 (192-242)||(21568561-21568611)
[»] scaffold0049 (1 HSPs)
scaffold0049 (193-242)||(57003-57052)
[»] chr5 (3 HSPs)
chr5 (187-243)||(21576680-21576736)
chr5 (192-240)||(19820328-19820376)
chr5 (192-240)||(38464313-38464361)
[»] chr4 (13 HSPs)
chr4 (191-243)||(23292925-23292977)
chr4 (192-240)||(47264068-47264116)
chr4 (192-243)||(35161104-35161155)
chr4 (192-235)||(36635406-36635449)
chr4 (192-242)||(2361915-2361965)
chr4 (192-242)||(24343582-24343632)
chr4 (193-243)||(30982808-30982858)
chr4 (190-235)||(5654501-5654546)
chr4 (192-241)||(18513175-18513224)
chr4 (194-243)||(28000672-28000721)
chr4 (192-241)||(30094083-30094132)
chr4 (191-231)||(2054123-2054163)
chr4 (192-240)||(11596297-11596345)
[»] chr3 (7 HSPs)
chr3 (192-240)||(20503536-20503584)
chr3 (192-243)||(11252044-11252095)
chr3 (192-242)||(11610578-11610628)
chr3 (191-241)||(34185051-34185101)
chr3 (193-226)||(7614357-7614390)
chr3 (191-240)||(8039763-8039812)
chr3 (129-157)||(49086903-49086931)
[»] chr6 (8 HSPs)
chr6 (192-243)||(16766776-16766827)
chr6 (192-243)||(17327590-17327641)
chr6 (194-241)||(26178620-26178667)
chr6 (192-243)||(33001229-33001280)
chr6 (192-243)||(34595202-34595253)
chr6 (194-235)||(5569825-5569866)
chr6 (191-240)||(32511605-32511654)
chr6 (191-243)||(24645549-24645601)


Alignment Details
Target: scaffold0036 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 35746 - 35691
Alignment:
Q  187 aatgactatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    |||| ||||||||||||||||||||||||| |||| ||||| ||||||||||||||    
T  35746 aatgtctatgaagcacagacactcttcagagtaggtgtgtttcggtgtcagacacg 35691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 8343446 - 8343395
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||||    
T  8343446 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgt 8343395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 8343086 - 8343037
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    |||||||||||||||||||||| |||||||||||| |||||||| |||||    
T  8343086 ctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacac 8343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 4673354 - 4673397
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtc 235  Q
    ||||||||||||||||||| |  |||||||||||||||||||||    
T  4673354 ctatgaagcacagacactccttggattaggcgtgttccggtgtc 4673397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 22197671 - 22197722
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||| |||||| ||||||| |||||||||||||| ||||||||| |||||||    
T  22197671 ctataaagcacggacactcctcagattaggcgtgatccggtgtcggacacgt 22197722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 24205749 - 24205796
Alignment:
Q  193 tatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||||    
T  24205749 tatgaaacacggacactcctcggattaggcgtgttccggtgtcagaca 24205796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 16641908 - 16641958
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    |||||||||||||||||||| || ||||||| |||| ||||||| ||||||    
T  16641908 actatgaagcacagacactcctcggattaggtgtgtcccggtgttagacac 16641958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 36450694 - 36450744
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||||||||||| || |||||||||||| | |||||| ||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacg 36450744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 160
Target Start/End: Original strand, 26414970 - 26415003
Alignment:
Q  127 ctattcaacacaaccattggacatggtctaagta 160  Q
    ||||||||||||||||||||||||||||| ||||    
T  26414970 ctattcaacacaaccattggacatggtcttagta 26415003  T

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Target: scaffold0003 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 236914 - 236964
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||||||||||| |||||||||| |||| |||||||||||||||    
T  236914 ctatgaagcacagacactcctcagattaggtgtgtcccggtgtcagacacg 236964  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 191 - 241
Target Start/End: Complemental strand, 43113054 - 43113004
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    |||||||||||||||| |||||||||||||| |||| ||||||||||||||    
T  43113054 actatgaagcacagactctcttcagattaggtgtgtcccggtgtcagacac 43113004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 29144320 - 29144369
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  29144320 ctatgaagcacggacactcttcggattaggcgtgttccggtgtcggacac 29144369  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 243
Target Start/End: Original strand, 1486640 - 1486695
Alignment:
Q  188 atgactatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||| ||||||||||||||||| || |||||||||||| |||||||| |||||||    
T  1486640 atgaccatgaagcacagacactcctcggattaggcgtgtcccggtgtcggacacgt 1486695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 6427594 - 6427543
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||| |||||||    
T  6427594 ctatgaagcacggacactcatcagattaggcgtgtcccggtgtcggacacgt 6427543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 235
Target Start/End: Original strand, 31694639 - 31694682
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtc 235  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||    
T  31694639 ctatgaagcacggacactcctcagattaggcgtgttccggtgtc 31694682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 15765877 - 15765828
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||||||||| |||||||||| |||||||||||| || |||||||||||    
T  15765877 ctatgaagcacggacactcttcggattaggcgtgtcccagtgtcagacac 15765828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 9690213 - 9690264
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||||| ||||||| | |||||||||||| |||||||| |||||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgt 9690264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 160
Target Start/End: Original strand, 44651843 - 44651874
Alignment:
Q  129 attcaacacaaccattggacatggtctaagta 160  Q
    ||||||||||||||||||||||||||||||||    
T  44651843 attcaacacaaccattggacatggtctaagta 44651874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 46940743 - 46940798
Alignment:
Q  187 aatgactatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    |||| |||||||||||  |||||| || ||||||||||||||||||||| ||||||    
T  46940743 aatgcctatgaagcacgaacactcctcggattaggcgtgttccggtgtcggacacg 46940798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 221
Target Start/End: Complemental strand, 17408822 - 17408792
Alignment:
Q  191 actatgaagcacagacactcttcagattagg 221  Q
    |||||||||||||||||||||||||||||||    
T  17408822 actatgaagcacagacactcttcagattagg 17408792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 16812676 - 16812635
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggt 232  Q
    |||||||||||| ||||||| ||||||||||||||| |||||    
T  16812676 actatgaagcacggacactcctcagattaggcgtgtcccggt 16812635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 245
Target Start/End: Complemental strand, 34741965 - 34741913
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgttg 245  Q
    ||||||||||| |||||||||| ||||||||||| ||| ||||| |||||||||    
T  34741965 ctatgaagcacggacactcttcggattaggcgtg-tcccgtgtcggacacgttg 34741913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 47989628 - 47989579
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    |||||||||||| ||||||| || |||||||||||| ||| |||||||||    
T  47989628 actatgaagcacggacactcctcggattaggcgtgtcccgatgtcagaca 47989579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 241
Target Start/End: Complemental strand, 9103741 - 9103693
Alignment:
Q  193 tatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    |||||||||| ||||||||| ||||||||||| || ||||||| |||||    
T  9103741 tatgaagcacggacactcttaagattaggcgtttttcggtgtccgacac 9103693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 11223793 - 11223841
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  11223793 ctatgaagcacggacactcctcagattaggcgtgtcccggtgtcagaca 11223841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 59
Target Start/End: Original strand, 21926570 - 21926604
Alignment:
Q  25 tatgtgttaaatgcatttcttttgattttatattt 59  Q
    |||||||||||||||||||||||||||||||||||    
T  21926570 tatgtgttaaatgcatttcttttgattttatattt 21926604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 14996171 - 14996210
Alignment:
Q  204 gacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  14996171 gacactcctcggattaggcgtgttccggtgtcagacacgt 14996210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 20242667 - 20242718
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||||||||||||||| ||| |||||||| |  |||||||||||||    
T  20242667 ctatgaagcacagacactcttcggataaggcgtgtcctcgtgtcagacacgt 20242718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 35056998 - 35056947
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| ||||||| |||||||||||||||| | ||||| |||||||    
T  35056998 ctatgaagcacggacactcctcagattaggcgtgtttccgtgtcggacacgt 35056947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 37419873 - 37419823
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||| ||||||| || |||||||||||| |||||||| ||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacg 37419823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 8164597 - 8164552
Alignment:
Q  196 gaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||||||||||||| ||||||||  ||||||||||||||| ||||    
T  8164597 gaagcacagacactcgtcagattaatcgtgttccggtgtcaaacac 8164552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 12748786 - 12748737
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||||||||||||||||| ||| ||||||| ||| |||||||| |||||    
T  12748786 ctatgaagcacagacactcctcaaattaggcatgtcccggtgtccgacac 12748737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 233
Target Start/End: Original strand, 22084756 - 22084797
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtg 233  Q
    ||||||||||||||||||| || |||||||||||| ||||||    
T  22084756 ctatgaagcacagacactcatcggattaggcgtgtcccggtg 22084797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 15907850 - 15907894
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtc 235  Q
    |||||||||||| ||||||| ||||||| ||||||| ||||||||    
T  15907850 actatgaagcacggacactcatcagattgggcgtgtcccggtgtc 15907894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 38117098 - 38117150
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||||| ||||| | || |||||||||||| |||||||| |||||||    
T  38117098 actatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacacgt 38117150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 13770810 - 13770764
Alignment:
Q  197 aagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||| |||||||||| ||||||||||||||||||||| |||||||    
T  13770810 aagcacggacactcttcggattaggcgtgttccggtgtcggacacgt 13770764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 5409771 - 5409822
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| ||||||| || |||||||||||| |||||||| |||||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgt 5409822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 43027404 - 43027455
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| ||||||| || |||||||||||| |||||||| |||||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacacgt 43027455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 21568561 - 21568611
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||||||||||| |||||||| || ||| |||||||| ||||||    
T  21568561 ctatgaagcacagacactcctcagattaagcatgtcccggtgtccgacacg 21568611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 57052 - 57003
Alignment:
Q  193 tatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||| |||||| |||||||||| || |||||||||||||||||    
T  57052 tatgaagcacaaacactcctcagattaggtgttttccggtgtcagacacg 57003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 21576680 - 21576736
Alignment:
Q  187 aatgactatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||| ||||||||||| ||||||| || |||||||||||| || |||||||||||||    
T  21576680 aatggctatgaagcacggacactcctcggattaggcgtgtcccagtgtcagacacgt 21576736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 19820328 - 19820376
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||| ||||||| || |||||||||||| |||||||| ||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcggaca 19820376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||||||||||| || ||||||| |||| |||||||| ||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 23292925 - 23292977
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||||| ||||||| || |||||||||||| |||||||| |||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgt 23292977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 47264116 - 47264068
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||||||| |||||| |||||||||||| | |||||||||||    
T  47264116 ctatgaagcacagacgctcttcggattaggcgtgtcctggtgtcagaca 47264068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 35161155 - 35161104
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| |||||| ||| ||||||| ||||||||||||| |||||||    
T  35161155 ctatgaagcacggacacttttcggattaggtgtgttccggtgtcggacacgt 35161104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 235
Target Start/End: Complemental strand, 36635449 - 36635406
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtc 235  Q
    ||||||||||| |||||||||| |||||||||||| ||||||||    
T  36635449 ctatgaagcacggacactcttcggattaggcgtgtcccggtgtc 36635406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 2361915 - 2361965
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||| ||||||| |||||||||| ||||  ||||||||||||||    
T  2361915 ctatgaagcacggacactcgtcagattaggtgtgtctcggtgtcagacacg 2361965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 24343632 - 24343582
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||| ||||||| ||||| ||||||||| |||||||| ||||||    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacg 24343582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 30982808 - 30982858
Alignment:
Q  193 tatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||| |||||||||  |||||||||||| |||||||| |||||||    
T  30982808 tatgaagcacggacactctttggattaggcgtgtcccggtgtcggacacgt 30982858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 5654501 - 5654546
Alignment:
Q  190 gactatgaagcacagacactcttcagattaggcgtgttccggtgtc 235  Q
    |||||||||||||| | ||||||| |||||||||| ||||||||||    
T  5654501 gactatgaagcacaaatactcttcggattaggcgtattccggtgtc 5654546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Original strand, 18513175 - 18513224
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||||||||| ||||||| ||||||||||||||| | |||||| |||||    
T  18513175 ctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacac 18513224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 28000672 - 28000721
Alignment:
Q  194 atgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||| ||||||| |||||||||| ||||  |||||||||||||||    
T  28000672 atgaagcacggacactcatcagattaggtgtgtctcggtgtcagacacgt 28000721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 30094132 - 30094083
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||| ||||| |||||||||| |||||||||||| |||||||| |||||    
T  30094132 ctatgtagcacggacactcttcggattaggcgtgtcccggtgtccgacac 30094083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 2054163 - 2054123
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccgg 231  Q
    |||||||| ||| ||||||||||||||||||||||| ||||    
T  2054163 actatgaaacacggacactcttcagattaggcgtgtcccgg 2054123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 11596297 - 11596345
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||| ||||||| ||||||||||||||| ||| |||| ||||    
T  11596297 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggaca 11596345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 20503584 - 20503536
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||| ||||||| || |||||||||||| |||||||||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcagaca 20503536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 11252095 - 11252044
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||||||||||| || |||||||||||||||| || | |||||||    
T  11252095 ctatgaagcacagacactcctcggattaggcgtgttccgatgccggacacgt 11252044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 11610628 - 11610578
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacg 242  Q
    ||||||||||| ||||||| ||||||||||||||| ||| |||| ||||||    
T  11610628 ctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacacg 11610578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 241
Target Start/End: Original strand, 34185051 - 34185101
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    |||||||||||| ||||||| || |||||||||||| |||||||| |||||    
T  34185051 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 34185101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 7614357 - 7614390
Alignment:
Q  193 tatgaagcacagacactcttcagattaggcgtgt 226  Q
    ||||||||||||||| ||||||||||||||||||    
T  7614357 tatgaagcacagacattcttcagattaggcgtgt 7614390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 8039763 - 8039812
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    ||||||||||||||| ||||||| ||||| |||||| |||||||| ||||    
T  8039763 actatgaagcacagatactcttcggattaagcgtgtcccggtgtcggaca 8039812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 49086903 - 49086931
Alignment:
Q  129 attcaacacaaccattggacatggtctaa 157  Q
    |||||||||||||||||||||||||||||    
T  49086903 attcaacacaaccattggacatggtctaa 49086931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 16766827 - 16766776
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| |||| ||||| |||||||||||| |||||||| |||||||    
T  16766827 ctatgaagcacggacattcttcggattaggcgtgtcccggtgtcggacacgt 16766776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 17327590 - 17327641
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| ||||||| || |||||||||||| || |||||||||||||    
T  17327590 ctatgaagcacggacactcctcggattaggcgtgtccctgtgtcagacacgt 17327641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 26178620 - 26178667
Alignment:
Q  194 atgaagcacagacactcttcagattaggcgtgttccggtgtcagacac 241  Q
    ||||||||||||||||| || |||||||||||| ||||||||| ||||    
T  26178620 atgaagcacagacactcctccgattaggcgtgtcccggtgtcaaacac 26178667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 33001229 - 33001280
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    |||||||||||| ||||||||  |||||||||| || |||||||||||||||    
T  33001229 ctatgaagcacaaacactctttggattaggcgtatttcggtgtcagacacgt 33001280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 34595253 - 34595202
Alignment:
Q  192 ctatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||| ||||||| || ||||||| |||| ||||||||||||||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgt 34595202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 5569866 - 5569825
Alignment:
Q  194 atgaagcacagacactcttcagattaggcgtgttccggtgtc 235  Q
    ||||||||| ||||||| ||||||||||||||||| ||||||    
T  5569866 atgaagcacggacactcctcagattaggcgtgttcaggtgtc 5569825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Original strand, 32511605 - 32511654
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagaca 240  Q
    |||||||||||| ||||||| || ||||||||||| |||| |||||||||    
T  32511605 actatgaagcacggacactcctccgattaggcgtgctccgatgtcagaca 32511654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 243
Target Start/End: Complemental strand, 24645601 - 24645549
Alignment:
Q  191 actatgaagcacagacactcttcagattaggcgtgttccggtgtcagacacgt 243  Q
    ||||||||||||||||||||||| |||||| |||||   |||||| |||||||    
T  24645601 actatgaagcacagacactcttcggattagacgtgtcttggtgtcggacacgt 24645549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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