View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21702_low_4 (Length: 244)

Name: NF21702_low_4
Description: NF21702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21702_low_4
NF21702_low_4
[»] scaffold0058 (1 HSPs)
scaffold0058 (12-232)||(53342-53562)
[»] chr8 (9 HSPs)
chr8 (12-233)||(14892564-14892785)
chr8 (19-232)||(21211789-21212002)
chr8 (12-159)||(22832121-22832268)
chr8 (68-140)||(18233759-18233831)
chr8 (68-140)||(18243210-18243282)
chr8 (25-140)||(25036173-25036288)
chr8 (25-140)||(25050210-25050325)
chr8 (70-140)||(12916388-12916458)
chr8 (68-140)||(33600768-33600840)
[»] chr6 (7 HSPs)
chr6 (21-232)||(29541756-29541967)
chr6 (12-232)||(18161374-18161594)
chr6 (12-232)||(16899255-16899475)
chr6 (12-232)||(31358870-31359090)
chr6 (12-230)||(34766667-34766885)
chr6 (12-230)||(18704855-18705073)
chr6 (12-230)||(18710790-18711008)
[»] chr7 (14 HSPs)
chr7 (12-232)||(9544052-9544272)
chr7 (12-232)||(46498423-46498643)
chr7 (12-232)||(16140996-16141216)
chr7 (12-232)||(5389983-5390203)
chr7 (12-232)||(26304865-26305085)
chr7 (12-232)||(26361733-26361953)
chr7 (12-232)||(32099689-32099909)
chr7 (12-232)||(8502358-8502578)
chr7 (12-232)||(44898608-44898828)
chr7 (12-232)||(6535793-6536013)
chr7 (12-186)||(13284241-13284416)
chr7 (70-230)||(42596698-42596858)
chr7 (69-139)||(7582477-7582547)
chr7 (69-139)||(15175386-15175456)
[»] chr4 (7 HSPs)
chr4 (12-230)||(17150684-17150902)
chr4 (12-230)||(520725-520943)
chr4 (12-232)||(6693527-6693747)
chr4 (12-231)||(16254548-16254762)
chr4 (12-230)||(7845270-7845488)
chr4 (69-139)||(54698640-54698710)
chr4 (22-131)||(26813342-26813451)
[»] chr5 (14 HSPs)
chr5 (12-232)||(18362586-18362806)
chr5 (12-232)||(26201137-26201357)
chr5 (12-232)||(27413457-27413677)
chr5 (12-230)||(20949166-20949384)
chr5 (12-232)||(33940629-33940849)
chr5 (46-230)||(23375743-23375927)
chr5 (69-140)||(5601579-5601650)
chr5 (69-139)||(24413672-24413742)
chr5 (69-139)||(30453465-30453535)
chr5 (69-139)||(30458543-30458613)
chr5 (157-230)||(19781874-19781947)
chr5 (68-140)||(24289951-24290023)
chr5 (68-140)||(24299458-24299530)
chr5 (68-140)||(22456711-22456783)
[»] chr3 (9 HSPs)
chr3 (12-232)||(8974155-8974375)
chr3 (12-232)||(6423616-6423836)
chr3 (12-232)||(9538444-9538664)
chr3 (12-232)||(12387297-12387516)
chr3 (69-140)||(48979673-48979744)
chr3 (22-131)||(28366893-28367002)
chr3 (84-131)||(28374776-28374823)
chr3 (84-131)||(28382598-28382645)
chr3 (69-140)||(4384458-4384529)
[»] chr1 (3 HSPs)
chr1 (12-232)||(16156192-16156412)
chr1 (12-230)||(1988001-1988219)
chr1 (25-172)||(22959697-22959844)
[»] scaffold0313 (2 HSPs)
scaffold0313 (12-230)||(7080-7298)
scaffold0313 (12-230)||(10862-11080)
[»] scaffold0254 (1 HSPs)
scaffold0254 (12-230)||(6380-6598)
[»] chr2 (6 HSPs)
chr2 (12-230)||(27168798-27169016)
chr2 (12-232)||(18652527-18652747)
chr2 (12-225)||(45015669-45015882)
chr2 (12-232)||(9512576-9512796)
chr2 (12-186)||(22903494-22903668)
chr2 (69-140)||(1791955-1792026)
[»] scaffold0014 (1 HSPs)
scaffold0014 (19-232)||(148017-148230)
[»] scaffold0141 (1 HSPs)
scaffold0141 (12-232)||(20084-20304)
[»] scaffold0016 (1 HSPs)
scaffold0016 (46-230)||(16538-16722)
[»] scaffold0015 (1 HSPs)
scaffold0015 (25-172)||(189351-189498)
[»] scaffold0028 (1 HSPs)
scaffold0028 (69-139)||(103154-103224)
[»] scaffold0010 (1 HSPs)
scaffold0010 (25-140)||(257898-258013)
[»] scaffold0529 (1 HSPs)
scaffold0529 (12-65)||(1-54)


Alignment Details
Target: scaffold0058 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 53342 - 53562
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||| |||||||    
T  53342 atgagatgtaccctcatgatgtatttttaaggtatcccatacctctttagcattcttacattcatcaactctttcactttcttccatggttaatgcacat 53441  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||  |||||    
T  53442 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctattgaccatgcactcttttctttgacagctccttctttggttgttggaa 53541  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  53542 caaagtctccatctgtgatga 53562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 233
Target Start/End: Original strand, 14892564 - 14892785
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||| ||||  ||||||||| ||||| ||||||||||||||||||||||||||||    
T  14892564 atgagatgtaccctcatgatgtatttttaaggtatcccatacctctttatcattcttacattcatcaactctttcactttcttccatggttagtgcacat 14892663  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||  |||||    
T  14892664 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcacttttttctttgacagctccttctttggttgttggaa 14892763  T
Q  212 caaagtctccatctgtgatgat 233  Q
    |||||||||||| |||||||||    
T  14892764 caaagtctccatatgtgatgat 14892785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 21211789 - 21212002
Alignment:
Q  19 gtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaa 118  Q
    ||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  21211789 gtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacatgatagaa 21211888  T
Q  119 agagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaacaaagtc 218  Q
    |||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  ||||||||||||    
T  21211889 agagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaacaaagtc 21211988  T
Q  219 tccatctgtgatga 232  Q
    ||||| ||||||||    
T  21211989 tccatttgtgatga 21212002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 159
Target Start/End: Complemental strand, 22832268 - 22832121
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| | |||| || |||||||||||||| |||||| |||| |||| ||||| ||||||||||| ||||||||||||||||    
T  22832268 atgagatgtaccttcatgatgtactctcaaagtgtcccatacctctttggcatttttacactcatcaactctttcactttctttcatggttagtgcacat 22832169  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttca 159  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||    
T  22832168 gatagaaagagtctagctttagagtttagtaatacctgagctttttca 22832121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 18233831 - 18233759
Alignment:
Q  68 tacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||||||| || ||||||||||||||||||||||| ||||  || |||||||  ||||||||| |||||    
T  18233831 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 18233759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 18243282 - 18243210
Alignment:
Q  68 tacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||||||| || ||||||||||||||||||||||| ||||  || |||||||  ||||||||| |||||    
T  18243282 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 18243210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 25036173 - 25036288
Alignment:
Q  25 tcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtc 124  Q
    |||||||||||||| || |||||||| |  ||||| ||  |  | |||||||||| || ||||||||||||||||||||||| ||||  || |||||||     
T  25036173 tcatgatgtatttttaatgtatcccaaatttcttttgccgtggtgcattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagtt 25036272  T
Q  125 tagctttagaatttaa 140  Q
     ||||||||| |||||    
T  25036273 gagctttagagtttaa 25036288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 25050210 - 25050325
Alignment:
Q  25 tcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtc 124  Q
    |||||||||||||| || |||||||| |  ||||| ||  |  | |||||||||| || ||||||||||||||||||||||| ||||  || |||||||     
T  25050210 tcatgatgtatttttaatgtatcccaaatttcttttgccgtggtgcattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagtt 25050309  T
Q  125 tagctttagaatttaa 140  Q
     ||||||||| |||||    
T  25050310 gagctttagagtttaa 25050325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 70 - 140
Target Start/End: Complemental strand, 12916458 - 12916388
Alignment:
Q  70 cattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||||| || ||||||||||||||||||||||| ||||  || |||||||  ||||||||| |||||    
T  12916458 cattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 12916388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 33600768 - 33600840
Alignment:
Q  68 tacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    ||||||||||||  | |||||||||||||||||||| || ||||  ||||||||||  |||||| ||||||||    
T  33600768 tacattcataaatcctttcactttcttccatggttaatgaacattgtagaaagagttgagctttggaatttaa 33600840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 4e-90; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 21 - 232
Target Start/End: Complemental strand, 29541967 - 29541756
Alignment:
Q  21 accctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaag 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  29541967 accctcatgatgtattttcaaggtatcccatacctctttagcattcttacattcatcaactctttcactttcttccatggttagtgcacatgatagaaag 29541868  T
Q  121 agtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaacaaagtctc 220  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||  ||||||||||||||    
T  29541867 agtctagctttagagtttaacaatacctgagccttttcatctgttgaccatgcactcttttctttgacagctccttctttggttgttggaacaaagtctc 29541768  T
Q  221 catctgtgatga 232  Q
    ||||| ||||||    
T  29541767 catctatgatga 29541756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 18161594 - 18161374
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  18161594 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 18161495  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  18161494 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 18161395  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  18161394 caaagtctccatctgtgatga 18161374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 16899475 - 16899255
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||| ||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  16899475 atgagatgtaccctcatgatgtattttcagagtatctcatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 16899376  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  16899375 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 16899276  T
Q  212 caaagtctccatctgtgatga 232  Q
    || ||||||||||||||||||    
T  16899275 catagtctccatctgtgatga 16899255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 31359090 - 31358870
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  31359090 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 31358991  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  31358990 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 31358891  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||| ||| ||||||||    
T  31358890 caaagtcttcatttgtgatga 31358870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 34766885 - 34766667
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  34766885 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 34766786  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  34766785 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 34766686  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  34766685 caaagtctccatctgtgat 34766667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 18704855 - 18705073
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| | |||  || || ||||||||||| |||||| |||| |||| ||||| | |||||||||||||||| |||||||||    
T  18704855 atgagatgtaccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactcttgcactttcttccatggtcagtgcacat 18704954  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    |||| |||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| || ||  ||||||||| |||||||  || ||    
T  18704955 gataaaaagagtctagctttagagtttagtaatacatgagctttttcatctgttgaccatgcactcttttcctttacagctccttatttggttgttgcaa 18705054  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  18705055 caaagtctccatctgtgat 18705073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 18710790 - 18711008
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| | |||  || || ||||||||||| |||||| |||| |||| ||||| | |||||||||||||||| |||||||||    
T  18710790 atgagatgtaccttcatgatgtactctcagagtgtctcatacctctttggcatttttacactcatcaactcttgcactttcttccatggtcagtgcacat 18710889  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    |||| |||||||||||||||||| ||||  ||||| |||||||||||||||||||||||||||||||| || ||  ||||||||| |||||||  || ||    
T  18710890 gataaaaagagtctagctttagagtttagtaatacatgagctttttcatctgttgaccatgcactcttttcctttacagctccttatttggttgttgcaa 18710989  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  18710990 caaagtctccatctgtgat 18711008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 9544052 - 9544272
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| |||||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  9544052 atgagatgtaccctcatgatgtattttcagggtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 9544151  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  9544152 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 9544251  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  9544252 caaagtctccatctgtgatga 9544272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 46498643 - 46498423
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||||||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  46498643 atgaaatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 46498544  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  46498543 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 46498444  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  46498443 caaagtctccatctgtgatga 46498423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 16140996 - 16141216
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  16140996 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 16141095  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  16141096 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 16141195  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  16141196 caaagtctccatctgtgatga 16141216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 5389983 - 5390203
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  5389983 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 5390082  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  5390083 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 5390182  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  5390183 caaagtctccatttgtgatga 5390203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 26305085 - 26304865
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  26305085 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 26304986  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  26304985 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 26304886  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  26304885 caaagtctccatttgtgatga 26304865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 26361733 - 26361953
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  26361733 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 26361832  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  26361833 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 26361932  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  26361933 caaagtctccatttgtgatga 26361953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 32099909 - 32099689
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  32099909 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 32099810  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  32099809 gatagaaagagtctagctttagagtttaataatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 32099710  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||| ||||||| ||||||||    
T  32099709 caaaatctccatttgtgatga 32099689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 8502578 - 8502358
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  8502578 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 8502479  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  8502478 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaa 8502379  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  8502378 caaagtctccatttgtgatga 8502358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 44898828 - 44898608
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  44898828 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 44898729  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  44898728 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaa 44898629  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  44898628 caaagtctccatttgtgatga 44898608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 6536013 - 6535793
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  6536013 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 6535914  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  6535913 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgctgaccatgcactttttgctttgacagctccttctttgtttgttggaa 6535814  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  6535813 caaagtctccatttgtgatga 6535793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 186
Target Start/End: Original strand, 13284241 - 13284416
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||||||||||||  | ||||||| ||||| ||||||||||||||||||||||||||||    
T  13284241 atgagatgtaccttcatgatgtactttcaaagtatcccatacctctttagcattcttgcattcatcaactctttcactttcttccatggttagtgcacat 13284340  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgac-catgcactcttatctttg 186  Q
     |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||    
T  13284341 aatagaaagagtctagctttagaatttaacaatacttgagatttttcatctgttgacacatgcactcttttctttg 13284416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 70 - 230
Target Start/End: Complemental strand, 42596858 - 42596698
Alignment:
Q  70 cattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgacc 169  Q
    ||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42596858 cattcatcacctctttcactttcttccatggttagtgcacatgatagaaagagtctagctttagagtttaacaatacctgagctttttcatctgttgacc 42596759  T
Q  170 atgcactcttatctttggcagctccttctttggttaatggaacaaagtctccatctgtgat 230  Q
    |||||||||| ||||||   | ||||| ||||||   ||||||||||||||||||||||||    
T  42596758 atgcactcttttctttgatggttccttttttggtctttggaacaaagtctccatctgtgat 42596698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 7582547 - 7582477
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||    
T  7582547 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagaattta 7582477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 15175456 - 15175386
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| ||||||||||| |||| ||||||||| ||||    
T  15175456 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaaaagtcaagctttagagttta 15175386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 17150902 - 17150684
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||| ||    
T  17150902 atgagatgtaccctcatgatgtattttcaaggtatcccatacctctttagcattcttacattcatcaactctttcactttcttccatggttagtgcaaat 17150803  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| |||||| ||||||  |||||    
T  17150802 gatagaaagagtctagctttaaagtttaacaatacctgagcattttcatctgttgaccatgcactcttttctttgacagttccttcgttggttgttggaa 17150703  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  17150702 caaagtctccatctgtgat 17150684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 520725 - 520943
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  520725 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 520824  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  520825 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 520924  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  520925 caaagtctccatctgtgat 520943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 6693747 - 6693527
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  6693747 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 6693648  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  6693647 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaa 6693548  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  6693547 caaagtctccatttgtgatga 6693527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 16254762 - 16254548
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| |||||||||||||||||||||||||||||||||     |||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||    
T  16254762 atgagatgtaccctcatgatgtattttcaaggtatccc-----tctttagcattcttacattcatcaactctttcactttcttccatggttagtgcacat 16254668  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||| ||| || || ||||||||||||||  |||||    
T  16254667 gatagaaagagtctagctttagagtttaacaatacttgagctttttcatctgttgaccatgtactcttttctgtgacaactccttctttggttgttggaa 16254568  T
Q  212 caaagtctccatctgtgatg 231  Q
    ||||||||||||||||||||    
T  16254567 caaagtctccatctgtgatg 16254548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 7845270 - 7845488
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||| ||||||||  || |||||||||||||| |||||| |||| |||| ||||| ||||||||||||||||||||||||||||    
T  7845270 atgagatgtaccctcatgatatattttcagagtgtcccatacctctttggcatttttacactcatcaactctttcactttcttccatggttagtgcacat 7845369  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    |||||||| |||||||||||||| ||||  ||||| ||||| ||||||||||||||||||||  |||| || ||   ||||||||||||| ||  |||||    
T  7845370 gatagaaaaagtctagctttagagtttagtaatacatgagccttttcatctgttgaccatgccttcttttcctttatagctccttctttgtttgttggaa 7845469  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  7845470 caaagtctccatctgtgat 7845488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 54698640 - 54698710
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  54698640 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 54698710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Complemental strand, 26813451 - 26813342
Alignment:
Q  22 ccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaaga 121  Q
    ||||||||||| ||||| |  || ||||| || ||||| ||| | | |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||    
T  26813451 ccctcatgatgaatttttagagtgtcccaaacttcttttgcagtaacacattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaaga 26813352  T
Q  122 gtctagcttt 131  Q
    ||| ||||||    
T  26813351 gtcgagcttt 26813342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 18362806 - 18362586
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  18362806 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 18362707  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  18362706 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 18362607  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  18362606 caaagtctccatctgtgatga 18362586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 26201137 - 26201357
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  26201137 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 26201236  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  26201237 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 26201336  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  26201337 caaagtctccatttgtgatga 26201357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 27413677 - 27413457
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  27413677 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 27413578  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||| ||||||  ||||||||| ||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  27413577 gatagaaagagtctagctttaaaatttagtaatacctgacctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 27413478  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  27413477 caaagtctccatctgtgatga 27413457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 20949384 - 20949166
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  20949384 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 20949285  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  20949284 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 20949185  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  20949184 caaagtctccatctgtgat 20949166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 33940849 - 33940629
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  33940849 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 33940750  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  33940749 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaa 33940650  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  33940649 caaagtctccatttgtgatga 33940629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 23375743 - 23375927
Alignment:
Q  46 tcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaacaata 145  Q
    ||||||||||||||||||||  | |||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  23375743 tcccatacctctttagcattcttgcatttatcaactctttcattttcttccatggttagtgcacatgataaaaagagtctaggtttagagtttaacaata 23375842  T
Q  146 cctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaacaaagtctccatctgtgat 230  Q
    | |||||||| |||||| |||||||||||||||| | ||||   | ||||||||| ||   ||||||||||||||||| ||||||    
T  23375843 catgagctttgtcatctattgaccatgcactcttttgtttgatggttccttctttagtctttggaacaaagtctccatttgtgat 23375927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 5601650 - 5601579
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  5601650 acattcatcaactctttcactttcttccatgcttagtgcacatgatagaaagagtcgagctttagaatttaa 5601579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Complemental strand, 24413742 - 24413672
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  24413742 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 24413672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 30453465 - 30453535
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  30453465 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 30453535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 30458543 - 30458613
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  30458543 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 30458613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 230
Target Start/End: Complemental strand, 19781947 - 19781874
Alignment:
Q  157 tcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaacaaagtctccatctgtgat 230  Q
    |||||||| ||||||||||| || || ||  || ||||||||||||||  ||||||||||||||||||||||||    
T  19781947 tcatctgtggaccatgcactattttcctttacaactccttctttggttgttggaacaaagtctccatctgtgat 19781874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 24289951 - 24290023
Alignment:
Q  68 tacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||||||| || ||||||||||||||||||||||| ||||  || |||||||  ||||||||| |||||    
T  24289951 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 24290023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 24299458 - 24299530
Alignment:
Q  68 tacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||||||| || ||||||||||||||||||||||| ||||  || |||||||  ||||||||| |||||    
T  24299458 tacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagttgagctttagagtttaa 24299530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 22456711 - 22456783
Alignment:
Q  68 tacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||||||| || |||||||||||||||||||| || ||||  || |||||||  |||||| ||||||||    
T  22456711 tacattcataaattctttcactttcttccatggttaatgaacattgtaaaaagagttgagctttggaatttaa 22456783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 8974375 - 8974155
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  8974375 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 8974276  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  8974275 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 8974176  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  8974175 caaagtctccatctgtgatga 8974155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 6423836 - 6423616
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||     
T  6423836 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacac 6423737  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||| | ||  ||||| |||||||||||||||||  |||||    
T  6423736 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcattttttgctttgacagctccttctttggttgttggaa 6423637  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  6423636 caaagtctccatctgtgatga 6423616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 9538664 - 9538444
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| | |||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  9538664 atgagatgtaccctcatgatgtattttcagagtatcccatacttgtttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 9538565  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  9538564 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 9538465  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  9538464 caaagtctccatttgtgatga 9538444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 12387516 - 12387297
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||| | |||||||||| | |||||||||||||||||||||| |||||  || |||||||||||| |||| |||||||||||||||||||||||    
T  12387516 atgagatgtaacttcatgatgtactatcaaggtatcccatacctcttt-gcattcttaaattcataaactctttcagtttcttccatggttagtgcacat 12387418  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||| ||||||||||||| ||||||||||||||| || |||||| ||| |||||||||||||  |||||    
T  12387417 gatagaaagagtctagctttagagtttattaatacttgagctttttcatttgttgaccatgcacttttttctttgacagttccttctttggtttttggaa 12387318  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  12387317 caaagtctccatctgtgatga 12387297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 48979744 - 48979673
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  48979744 acattcatcaactctttcactttcttccatgcttagtgcacatgatagaaagagtcgagctttagaatttaa 48979673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 28366893 - 28367002
Alignment:
Q  22 ccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaaga 121  Q
    ||||||||||| ||||| |  || ||||| || ||||| ||| | | |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||    
T  28366893 ccctcatgatgaatttttagagtgtcccaaacttcttttgcagtgacacattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaaga 28366992  T
Q  122 gtctagcttt 131  Q
    ||| ||||||    
T  28366993 gtcgagcttt 28367002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 28374776 - 28374823
Alignment:
Q  84 ttcactttcttccatggttagtgcacatgatagaaagagtctagcttt 131  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  28374776 ttcactttcttccatgcttagtgcgcatgatagaaagagtcgagcttt 28374823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 131
Target Start/End: Original strand, 28382598 - 28382645
Alignment:
Q  84 ttcactttcttccatggttagtgcacatgatagaaagagtctagcttt 131  Q
    |||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  28382598 ttcactttcttccatgcttagtgcgcatgatagaaagagtcgagcttt 28382645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 140
Target Start/End: Original strand, 4384458 - 4384529
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||| ||||| |||||||||||||||| ||| |   ||||||||| ||| || |||||||||||||||    
T  4384458 acattcatcaactctttcactttcttccatgcttaatctgcatgatagatagactcgagctttagaatttaa 4384529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 16156412 - 16156192
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  ||||||||||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  16156412 atgagatgtaccctcatgatgtattttcagagtatcccatacttctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 16156313  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  16156312 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 16156213  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  16156212 caaagtctccatctgtgatga 16156192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 1988001 - 1988219
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  1988001 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 1988100  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||     ||||||||||||||||||||    
T  1988101 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgattccttctttggttaatggaa 1988200  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  1988201 caaagtctccatctgtgat 1988219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 172
Target Start/End: Complemental strand, 22959844 - 22959697
Alignment:
Q  25 tcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtc 124  Q
    |||||||||| ||| || || ||||| || ||||| |||||| ||||||||| ||| | |||||||||||||| ||||| ||||||||||| ||| |  |    
T  22959844 tcatgatgtacttttaaagtgtcccacacttctttggcatttgtacattcatcaaccctttcactttcttccaaggttaatgcacatgataaaaataagc 22959745  T
Q  125 tagctttagaatttaacaatacctgagctttttcatctgttgaccatg 172  Q
    || ||||||||||||||||||||| | |||||||||| |||| |||||    
T  22959744 taactttagaatttaacaataccttatctttttcatcagttgtccatg 22959697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 7298 - 7080
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  7298 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 7199  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  7198 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 7099  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  7098 caaagtctccatctgtgat 7080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Complemental strand, 11080 - 10862
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  11080 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 10981  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  10980 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 10881  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  10880 caaagtctccatctgtgat 10862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 6380 - 6598
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  6380 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 6479  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  6480 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 6579  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  6580 caaagtctccatctgtgat 6598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 27168798 - 27169016
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||| ||||||||||||||||||||||||||||    
T  27168798 atgagatgtaccttcatgatgtactttcaaggtatcccatacctctttagcatttttgcattcatcaactctttcactttcttccatggttagtgcacat 27168897  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| |||||      ||||||||||||| |||||    
T  27168898 gatagaaagagtctagctttagagtttagcaatacctgagccttttcatctgttgaccatgcactcttaactttgatgatcccttctttggttagtggaa 27168997  T
Q  212 caaagtctccatctgtgat 230  Q
    |||||||||||||||||||    
T  27168998 caaagtctccatctgtgat 27169016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 18652747 - 18652527
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  18652747 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 18652648  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  18652647 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaa 18652548  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  18652547 caaagtctccatttgtgatga 18652527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 12 - 225
Target Start/End: Complemental strand, 45015882 - 45015669
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||    
T  45015882 atgagatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttgtacattcatcaactctttcactttcttccatggttagtgcacat 45015783  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    |||| ||||| |||||||||||| | ||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||||||  |||||    
T  45015782 gataaaaagactctagctttagagtatagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttggttgttggaa 45015683  T
Q  212 caaagtctccatct 225  Q
    |||| ||| |||||    
T  45015682 caaaatcttcatct 45015669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 9512576 - 9512796
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||||||||||||||||||||  |||||||||||  ||||||||||| |||| |||| ||||| ||||||||||||||||||||||||||||    
T  9512576 atgagatgtaccctcatgatgtattttcagagtatcccatactcctttagcatttgtacactcatcaactctttcactttcttccatggttagtgcacat 9512675  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||  ||||| |||||||||||||| ||  |||||    
T  9512676 gatagaaagagtctagctttagagtttagtaatacctgagctttttcatctgttgaccatgcactttttgctttgacagctccttctttgtttgttggaa 9512775  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||| ||||||||    
T  9512776 caaagtctccatttgtgatga 9512796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 12 - 186
Target Start/End: Complemental strand, 22903668 - 22903494
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| |||||||||| | ||||  |||||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||    
T  22903668 atgagatgtaccatcatgatgtaatatcaaaatatcccatacatctttagcattaatacattcatcaactctttcactttcttccatggttagtgcacat 22903569  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttg 186  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  22903568 gatagaaagagtctagctttagagtttaacaatacctgagttttttcatctgttgaccatgcactcttttctttg 22903494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 140
Target Start/End: Complemental strand, 1792026 - 1791955
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaa 140  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  1792026 acattcatcaactctttcactttcttccatgcttagtgcacatgatagaaagagtcgagctttagaatttaa 1791955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 148230 - 148017
Alignment:
Q  19 gtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaa 118  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||  ||||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  148230 gtaccctcatgatgtatttttaaggtatcacatacctctttagcattcttacattcatcaactctttcactttcttccatggtaagtgcacatgatagaa 148131  T
Q  119 agagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaacaaagtc 218  Q
    |||||||||||| ||| ||||  ||||||||||||||||||| |||||||||||||||||| || ||  |||||||||||||||||  ||||||||||||    
T  148130 agagtctagcttaagagtttagtaatacctgagctttttcatttgttgaccatgcactcttttcctttacagctccttctttggttgttggaacaaagtc 148031  T
Q  219 tccatctgtgatga 232  Q
    ||||||||||||||    
T  148030 tccatctgtgatga 148017  T

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Target: scaffold0141 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 20304 - 20084
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacat 111  Q
    |||| ||||||| | |||||||| | |||  || |||||||| ||||| |||||| ||||  ||| ||||| ||||||||||||| | || |||||||||    
T  20304 atgagatgtacctttatgatgtactctcagagtgtcccatacatctttggcatttttacacacatcaactctttcactttcttccctagtcagtgcacat 20205  T
Q  112 gatagaaagagtctagctttagaatttaacaatacctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaa 211  Q
    |||||||||||||||||||| || ||||  |||||||||| |||||||||||||||||||||||| || |||||  |||||||||||||||||  |||||    
T  20204 gatagaaagagtctagctttggagtttagtaatacctgagatttttcatctgttgaccatgcacttttttcttttacagctccttctttggttgttggaa 20105  T
Q  212 caaagtctccatctgtgatga 232  Q
    |||||||||||||||||||||    
T  20104 caaagtctccatctgtgatga 20084  T

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Target: scaffold0016 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 230
Target Start/End: Complemental strand, 16722 - 16538
Alignment:
Q  46 tcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaatttaacaata 145  Q
    ||||||||||||||||||||  | |||| || ||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||    
T  16722 tcccatacctctttagcattcttgcatttatcaactctttcattttcttccatggttagtgcacatgataaaaagagtctaggtttagagtttaacaata 16623  T
Q  146 cctgagctttttcatctgttgaccatgcactcttatctttggcagctccttctttggttaatggaacaaagtctccatctgtgat 230  Q
    | |||||||| |||||| |||||||||||||||| | ||||   | ||||||||| ||   ||||||||||||||||| ||||||    
T  16622 catgagctttgtcatctattgaccatgcactcttttgtttgatggttccttctttagtctttggaacaaagtctccatttgtgat 16538  T

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Target: scaffold0015 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 172
Target Start/End: Original strand, 189351 - 189498
Alignment:
Q  25 tcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtc 124  Q
    |||||||||| ||| || || ||||| || ||||| |||||| ||||||||| ||| | |||| ||||||||| ||||||||||||||||| ||| |  |    
T  189351 tcatgatgtacttttaaagtgtcccacacttctttggcatttgtacattcatcaaccctttcaatttcttccaaggttagtgcacatgataaaaataagc 189450  T
Q  125 tagctttagaatttaacaatacctgagctttttcatctgttgaccatg 172  Q
    || ||||||||||||||||||||| | |||||||||| |||| |||||    
T  189451 taactttagaatttaacaataccttatctttttcatcagttgtccatg 189498  T

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Target: scaffold0028 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 69 - 139
Target Start/End: Original strand, 103154 - 103224
Alignment:
Q  69 acattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtctagctttagaattta 139  Q
    |||||||| ||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||| ||||    
T  103154 acattcatcaactctttcactttcttccatgcttagtgcgcatgatagaaagagtcgagctttagagttta 103224  T

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Target: scaffold0010 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 258013 - 257898
Alignment:
Q  25 tcatgatgtattttcaaggtatcccatacctctttagcatttatacattcataaactcattcactttcttccatggttagtgcacatgatagaaagagtc 124  Q
    |||||||| ||||| || ||||||||||  ||||| ||  |  |||||||||||| || ||||||||||||||||||||||| ||||  || |||||||     
T  258013 tcatgatgaatttttaacgtatcccatatttcttttgccgtagtacattcataaattctttcactttcttccatggttagtgaacattgtaaaaagagtt 257914  T
Q  125 tagctttagaatttaa 140  Q
     ||||||||| |||||    
T  257913 gagctttagagtttaa 257898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0529 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 54 - 1
Alignment:
Q  12 atgaaatgtaccctcatgatgtattttcaaggtatcccatacctctttagcatt 65  Q
    |||| ||||||| |||||||||| |||||| |||||||||||||||||||||||    
T  54 atgagatgtaccttcatgatgtactttcaaagtatcccatacctctttagcatt 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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