View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21703_high_3 (Length: 241)
Name: NF21703_high_3
Description: NF21703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21703_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 46998407 - 46998175
Alignment:
| Q |
1 |
tcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggcc |
100 |
Q |
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| T |
46998407 |
tcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggcc |
46998308 |
T |
|
| Q |
101 |
gtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
46998307 |
gtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatat |
46998208 |
T |
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| Q |
201 |
caccatcaatgatattctctcacctgatgatgt |
233 |
Q |
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|||||||||||||||||||||||||| |||||| |
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| T |
46998207 |
caccatcaatgatattctctcacctgttgatgt |
46998175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 46981331 - 46981117
Alignment:
| Q |
1 |
tcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggcc |
100 |
Q |
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||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| | |
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| T |
46981331 |
tcatcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttccctcacgcttttccatttctatcccctctcaggtc |
46981232 |
T |
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| Q |
101 |
gtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatat |
200 |
Q |
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| T |
46981231 |
gtcttgttactaaaaaatccgaagatcctgattcttacactgttttcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttagatat |
46981132 |
T |
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| Q |
201 |
caccatcaatgatat |
215 |
Q |
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|||||| |||||||| |
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| T |
46981131 |
caccataaatgatat |
46981117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 46 - 224
Target Start/End: Complemental strand, 46996114 - 46995936
Alignment:
| Q |
46 |
aaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgttt |
145 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
46996114 |
aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctcattcttacactgttt |
46996015 |
T |
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| Q |
146 |
ttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacc |
224 |
Q |
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| T |
46996014 |
ttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcacc |
46995936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 46975343 - 46975110
Alignment:
| Q |
2 |
catcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccg |
101 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| | || || ||||| |||||||| ||||| ||||||||||| |||| ||||||| || || || |
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| T |
46975343 |
catcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcacactttttcattattatcccctgtctggtcg |
46975244 |
T |
|
| Q |
102 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
201 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
46975243 |
tcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttattcatgcaactttagatatc |
46975144 |
T |
|
| Q |
202 |
accatcaatgatattctctcacctgatgatgtcc |
235 |
Q |
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||||| ||||||||||||||||| | |||||||| |
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| T |
46975143 |
accataaatgatattctctcaccagttgatgtcc |
46975110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 102 - 235
Target Start/End: Complemental strand, 47001998 - 47001865
Alignment:
| Q |
102 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
201 |
Q |
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|||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
47001998 |
tcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaactttagatatc |
47001899 |
T |
|
| Q |
202 |
accatcaatgatattctctcacctgatgatgtcc |
235 |
Q |
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||| |||||| |||||||||||||| |||||||| |
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| T |
47001898 |
accgtcaatgttattctctcacctgttgatgtcc |
47001865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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