View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21703_low_1 (Length: 277)
Name: NF21703_low_1
Description: NF21703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21703_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 21926503 - 21926256
Alignment:
| Q |
1 |
taatgggtttctgaatagaagaagaaaagaaatttgtttgttaaggattgaaaatgataagaatgaaataaatatagaaatatacatacaatgcctggat |
100 |
Q |
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| T |
21926503 |
taatgggtttctgaatagaagaa---aagaaatttgtttgttaaggattgaaaatgataagaatgaaataaatatagaaatatacatacaatgccaggat |
21926407 |
T |
|
| Q |
101 |
tctgatgaggatcacgtttgtacatagaaacacattttcctctaatgaagagaaaacgtaggtgacaatattcatgaccaatagaattcaccccaaggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21926406 |
tctgatgaggatcacgtttgtacatagaaacacatttgcctctaatgaagagaaaacgaaggtgacaatattcatgaccaatagaattcaccccaaggtg |
21926307 |
T |
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| Q |
201 |
ataaacccaaccgaaatattcaaaccttcctcctttttcttctgttcctcc |
251 |
Q |
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| T |
21926306 |
ataaacccaaccgaaatattcaaaccttcctcctttttcttctgttcctcc |
21926256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 48353461 - 48353330
Alignment:
| Q |
84 |
acatacaatgcctggattctgatgaggatcacgtttgtacatagaaacacattttcctctaatgaagagaaaacgtaggtgacaatattcatgaccaata |
183 |
Q |
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|||||||||| | || || | ||||||||| || |||||||| |||||| | |||||||| || || ||||| || || |||||||||| ||||||||| |
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| T |
48353461 |
acatacaatggcagggttttcatgaggatcgcgcttgtacatggaaacatactttcctctgatcaaaagaaatcgaagatgacaatattgatgaccaatg |
48353362 |
T |
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| Q |
184 |
gaattcaccccaaggtgataaacccaaccgaa |
215 |
Q |
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|||||||| || | |||||| ||||||||||| |
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| T |
48353361 |
gaattcactcctaagtgatatacccaaccgaa |
48353330 |
T |
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