View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2170_high_1 (Length: 525)
Name: NF2170_high_1
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2170_high_1 |
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| [»] scaffold0559 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 40783112 - 40782713
Alignment:
| Q |
1 |
tgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatctaagagtgagca-taaattaaaggaggaaacatgatgaggttg |
99 |
Q |
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| T |
40783112 |
tgagatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttctatctaagagtgagcaataaattaaaggaggaaacatgatgaggttg |
40783013 |
T |
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| Q |
100 |
tgttgtttgtgagcatgcgcacacatacacatgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacgtgaagatggtc |
199 |
Q |
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| T |
40783012 |
tgttgtttgtgagcatgcgcacacataca--tgatacatagattagagacatgaaattgaaaggcaatatagtgaagaaggtggtcacgtgaagatggtc |
40782915 |
T |
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| Q |
200 |
gaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaaatgggtccctga |
299 |
Q |
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| T |
40782914 |
gaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtttaaatgggtccctga |
40782815 |
T |
|
| Q |
300 |
agctccctaacacacttccacgacacatgatttgtgttggcccatttgcttcctttggcgctgaaaaattaaaaggaggttaaagaaagaaaggaagaag |
399 |
Q |
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| T |
40782814 |
agctccctaacacacttccacgacacatgatttgtgttggcccatttgcttcctttggcgctgaaaaattaaaaggatgttaaagaaagaaaggaagaag |
40782715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 469 - 525
Target Start/End: Complemental strand, 40782645 - 40782589
Alignment:
| Q |
469 |
taaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
525 |
Q |
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| T |
40782645 |
taaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
40782589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 180; Significance: 6e-97; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 185 - 400
Target Start/End: Complemental strand, 10990 - 10773
Alignment:
| Q |
185 |
cacgtgaagatggtcgaccccatcgtccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
284 |
Q |
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| T |
10990 |
cacgtgaagatggtcgaccccatcatccattatctaccatataggccatagcacagtgatactcacaagaagccccaaattgcaataaaagcacagtgtt |
10891 |
T |
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| Q |
285 |
taaatgggtccctgaagctccctaacacacttccacgacacatga-tttgtgttggcccatttgcttcctttggcgctgaaaaa--ttaaaaggaggtta |
381 |
Q |
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| T |
10890 |
taaatgggt-cctgaagctccctaacacacttccacgacacatgattttgtgttggcccatttgcttcctttggcgctgaaaaaattaaaaaggatgtta |
10792 |
T |
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| Q |
382 |
aagaaagaaaggaagaaga |
400 |
Q |
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| T |
10791 |
aagaaagaaaggaagaaga |
10773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 470 - 525
Target Start/End: Complemental strand, 10693 - 10638
Alignment:
| Q |
470 |
aaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
525 |
Q |
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| T |
10693 |
aaagggttctcatgtgctatacaatcaagggcttagatctctcacgtgatgaaaga |
10638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 48661237 - 48661108
Alignment:
| Q |
3 |
agatgtgaaatccttgtttttgatcgaatttaatttaactaagatattttcgatc-taa--gagtgagcataaattaaaggaggaaacatgatg--aggt |
97 |
Q |
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| T |
48661237 |
agatgtgaaatccttgtttt-gatccaatttaatttaacttagatattttagagcatgagtgagtgagcataaattaaaggatacataatgatgttgtgt |
48661139 |
T |
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| Q |
98 |
tgtgttgtttgtgagcatgcgcacacataca |
128 |
Q |
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| T |
48661138 |
tgttttgtttgtgagcatgtgcacacataca |
48661108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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