View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2170_high_5 (Length: 314)

Name: NF2170_high_5
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2170_high_5
NF2170_high_5
[»] chr2 (18 HSPs)
chr2 (84-247)||(18059303-18059472)
chr2 (13-77)||(18060653-18060717)
chr2 (155-247)||(6177790-6177882)
chr2 (154-277)||(41643886-41644009)
chr2 (154-277)||(19073371-19073495)
chr2 (141-277)||(41713164-41713299)
chr2 (154-247)||(34441864-34441955)
chr2 (154-247)||(18947539-18947632)
chr2 (177-244)||(18779345-18779412)
chr2 (276-314)||(18947440-18947478)
chr2 (154-247)||(42005403-42005494)
chr2 (274-313)||(42005565-42005604)
chr2 (275-313)||(18779230-18779268)
chr2 (276-313)||(6177954-6177991)
chr2 (168-277)||(15650876-15650985)
chr2 (274-314)||(27138851-27138891)
chr2 (274-314)||(34441753-34441793)
chr2 (274-314)||(41644050-41644090)
[»] chr3 (13 HSPs)
chr3 (154-277)||(40640545-40640668)
chr3 (166-277)||(19606825-19606936)
chr3 (154-247)||(45879439-45879532)
chr3 (154-277)||(49359539-49359662)
chr3 (153-242)||(7568665-7568754)
chr3 (274-314)||(7568549-7568589)
chr3 (274-314)||(7758253-7758293)
chr3 (274-314)||(47930497-47930537)
chr3 (154-225)||(47930629-47930700)
chr3 (206-277)||(53811887-53811958)
chr3 (154-240)||(32180695-32180781)
chr3 (274-314)||(45879317-45879357)
chr3 (274-314)||(51878292-51878332)
[»] chr4 (9 HSPs)
chr4 (154-270)||(2704526-2704640)
chr4 (154-277)||(2266767-2266890)
chr4 (185-279)||(9743633-9743727)
chr4 (184-277)||(1012340-1012433)
chr4 (154-247)||(20097428-20097525)
chr4 (154-276)||(17612349-17612470)
chr4 (274-314)||(2708051-2708091)
chr4 (189-245)||(51204632-51204688)
chr4 (274-314)||(54995629-54995669)
[»] scaffold0200 (2 HSPs)
scaffold0200 (163-247)||(24758-24842)
scaffold0200 (276-313)||(24649-24686)
[»] chr7 (12 HSPs)
chr7 (154-258)||(4902354-4902458)
chr7 (155-247)||(23402312-23402404)
chr7 (156-247)||(37854235-37854326)
chr7 (154-247)||(22955253-22955346)
chr7 (166-277)||(7742945-7743056)
chr7 (199-277)||(19786343-19786421)
chr7 (187-247)||(8133500-8133560)
chr7 (166-247)||(5781544-5781623)
chr7 (150-247)||(49002237-49002333)
chr7 (274-314)||(5781694-5781734)
chr7 (273-313)||(22955143-22955183)
chr7 (274-314)||(4618585-4618625)
[»] chr8 (4 HSPs)
chr8 (77-136)||(19924158-19924217)
chr8 (154-270)||(4108832-4108946)
chr8 (274-314)||(23176616-23176656)
chr8 (274-314)||(4108744-4108784)
[»] chr1 (9 HSPs)
chr1 (166-277)||(13876830-13876941)
chr1 (156-247)||(16127536-16127627)
chr1 (184-247)||(10758241-10758304)
chr1 (156-277)||(27118346-27118467)
chr1 (274-313)||(25943376-25943415)
chr1 (166-247)||(25943224-25943305)
chr1 (274-314)||(15964278-15964318)
chr1 (274-314)||(16127695-16127735)
chr1 (274-314)||(27118508-27118548)
[»] chr6 (8 HSPs)
chr6 (89-140)||(406961-407012)
chr6 (154-277)||(11084065-11084186)
chr6 (154-277)||(19631763-19631886)
chr6 (274-314)||(26301755-26301795)
chr6 (274-314)||(11083984-11084024)
chr6 (166-234)||(26301877-26301945)
chr6 (22-59)||(2996228-2996265)
chr6 (274-314)||(34994009-34994049)
[»] chr5 (10 HSPs)
chr5 (154-277)||(10237428-10237551)
chr5 (154-277)||(22616508-22616630)
chr5 (184-277)||(31878427-31878520)
chr5 (189-277)||(25653633-25653721)
chr5 (166-247)||(21320777-21320858)
chr5 (274-314)||(36055704-36055744)
chr5 (274-314)||(41417409-41417449)
chr5 (188-247)||(26411345-26411404)
chr5 (158-277)||(36055785-36055904)
chr5 (274-314)||(22616671-22616711)


Alignment Details
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 84 - 247
Target Start/End: Complemental strand, 18059472 - 18059303
Alignment:
Q  84 aaaatatgccttctttaaaactccaaggaactaccaccatcaacccaattaaattatggaaaagtc-tatatgaagtcaggagaatga-----tttttct 177  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |   |||||||  || |||||     ||||| |    
T  18059472 aaaagatgccttctttaaaactccaaggaactaccaccatcaatccaattaaattatggaaaattcttcggtgaagtcgtgataatgaattttttttttt 18059373  T
Q  178 gatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    | |||||||||||| ||||||||||| ||||| ||||||||||||||| || |||| |||||||||||||    
T  18059372 ggtgatgttaaatggtcaattattgaatatttgtgtatttaattcatgtcatgtcagattatatggtgta 18059303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 18060717 - 18060653
Alignment:
Q  13 atactatagtagcacattgaagcaatcaatagaagctagtggcaagcttaaaaaacaaaacacca 77  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18060717 atactatagtagcacattgaagcaatcaatagaagctggtggcaagcttaaaaaacaaaacacca 18060653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 247
Target Start/End: Original strand, 6177790 - 6177882
Alignment:
Q  155 gaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||||| |||||||| ||||||| ||| |||||||| ||||| |||||| |||| ||||||||||||||| ||||||| |||||||||||||    
T  6177790 gaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgta 6177882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 41643886 - 41644009
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| |||| || ||| |||||||| ||||| |||||| |||| ||||||||||||||| ||||||| |||||||||||||   |||    
T  41643886 tgaagtcatgataatgacttttttggtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcac 41643985  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    |||||  | |||||||| ||||||    
T  41643986 atttgatcataaggtgtgtcatta 41644009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 19073371 - 19073495
Alignment:
Q  154 tgaagtcaggagaatgatttttct-gatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaaca 252  Q
    |||||| | ||||||||||||| | | ||| |||||||| ||||| |||||| |||| |||||||||| |||| ||||||| |||||||||||||   ||    
T  19073371 tgaagttatgagaatgattttttttggtgaagttaaatggtcaatcattgagaatttgtgtatttaatccatgtcacgtcagattatatggtgtattcca 19073470  T
Q  253 catttgtccgtaaggtgtatcatta 277  Q
    ||||||||  |||||||| ||||||    
T  19073471 catttgtctataaggtgtgtcatta 19073495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 277
Target Start/End: Original strand, 41713164 - 41713299
Alignment:
Q  141 ggaaaagtctata-tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattat 239  Q
    |||||| |||||| |||| ||| || ||||||||||||| |||  |||||||| |||| ||||| ||||| ||||||||||||||| ||||||  |||||    
T  41713164 ggaaaattctatagtgaaatcatgaaaatgatttttctggtgaaattaaatgaccaatcattgaatatttatgtatttaattcatgtcacgtc--attat 41713261  T
Q  240 atggtgtacaacacatttgtccgtaaggtgtatcatta 277  Q
    |||||||   ||||||||| || |||| ||| ||||||    
T  41713262 atggtgtgttacacatttgcccataagatgtgtcatta 41713299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 34441955 - 34441864
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||| || ||||| |||| || | | ||||||||| |||||||||| ||||| ||||||||||||||| ||||||  |||||||||||||    
T  34441955 tgaagtcatgaaaatgacttttttggtaaagttaaatgaccaattattgaatatttgtgtatttaattcatgtcacgtc--attatatggtgta 34441864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 18947632 - 18947539
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||| || ||| | ||||||| ||| |||||||| ||||| |||||  |||| |||||||||| |||| ||||||| |||||||||||||    
T  18947632 tgaagtcatgaaaataacttttctggtgaagttaaatggtcaatcattgaacatttgtgtatttaatccatgtcacgtcagattatatggtgta 18947539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 18779412 - 18779345
Alignment:
Q  177 tgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggt 244  Q
    |||||| |||||||| ||||| |||||| |||| ||||||||||||||| ||| ||| ||||||||||    
T  18779412 tgatgaagttaaatggtcaatcattgagcatttgtgtatttaattcatgtcacatcagattatatggt 18779345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 314
Target Start/End: Complemental strand, 18947478 - 18947440
Alignment:
Q  276 taaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  18947478 taaacatagattctcatttgtgcattaagattgaaattc 18947440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 42005403 - 42005494
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||| || |||||||||| || ||| |||||||||||||  ||||| ||||| | |||||||| |||| ||||||  |||||||||||||    
T  42005403 tgaagtcatgaaaatgatttttttggtgaagttaaatgatcaaccattgaatatttgtttatttaatccatgtcacgtc--attatatggtgta 42005494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 42005565 - 42005604
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaatt 313  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  42005565 attaaacatagattctcatttgtgcactaagattgaaatt 42005604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 313
Target Start/End: Complemental strand, 18779268 - 18779230
Alignment:
Q  275 ttaaacatagattctcatttgtgtattaagattgaaatt 313  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  18779268 ttaaacatagattctcatttgtgcactaagattgaaatt 18779230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Original strand, 6177954 - 6177991
Alignment:
Q  276 taaacatagattctcatttgtgtattaagattgaaatt 313  Q
    |||||||||||||||||||||| | |||||||||||||    
T  6177954 taaacatagattctcatttgtgcactaagattgaaatt 6177991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 277
Target Start/End: Original strand, 15650876 - 15650985
Alignment:
Q  168 tgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaagg 267  Q
    |||| ||| |||||| |||||||  ||||| ||| | ||||| |||||||||| |||  ||||| | |||||||||||||   |||||||| || |||||    
T  15650876 tgatgtttttgatgaagttaaatcgtcaatcattaaatatttgtgtatttaatccatatcacgtaagattatatggtgtatttcacatttgcccataagg 15650975  T
Q  268 tgtatcatta 277  Q
    ||| ||||||    
T  15650976 tgtgtcatta 15650985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 27138891 - 27138851
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  27138891 attaaacatagattcccatttgtgcactaagattgaaattc 27138851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 34441793 - 34441753
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  34441793 attaaacatagattctcatttgtgcactaaaattgaaattc 34441753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 41644050 - 41644090
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    ||||||||||| |||||||||||| | ||||||||||||||    
T  41644050 attaaacatagtttctcatttgtgcactaagattgaaattc 41644090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 40640668 - 40640545
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| |||||||| ||||||| ||| |||||||| ||||| |||||| |||| |||||||||| |||| |||||||||||||||||||||   |||    
T  40640668 tgaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgagcatttgtgtatttaatccatgtcacgtcatattatatggtgtattgcac 40640569  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    ||||| || |||| ||| ||||||    
T  40640568 atttgcccataagatgtgtcatta 40640545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 19606936 - 19606825
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaa 265  Q
    ||||| ||||||| ||| ||||||||| |||| |||||| |||| ||||||||||||| | ||||||| |||||||||||||    |||||| ||| |||    
T  19606936 aatgacttttctggtgaagttaaatgaccaatgattgagcatttgtgtatttaattcaggtcacgtcagattatatggtgtattgaacatttttccataa 19606837  T
Q  266 ggtgtatcatta 277  Q
    ||||| ||||||    
T  19606836 ggtgtgtcatta 19606825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 45879532 - 45879439
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||| |||||||| ||||||| | | ||||||||  |||| |||||| |||| |||||||||| |||| ||||||| |||||||||||||    
T  45879532 tgaagtcatgagaatgacttttctggtaaagttaaatggccaatcattgagcatttgtgtatttaatccatgccacgtcagattatatggtgta 45879439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 49359662 - 49359539
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| |||| |  ||| ||||||||  |||| |||||  |||| |||||||||| ||||||||||||||||||||| ||||   |||    
T  49359662 tgaagtcatgaaaatgactttttttgtgaagttaaatggccaatcattgaacatttgtgtatttaatccatgacacgtcatattatatgatgtattgcac 49359563  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    |||||  | |||||||| ||||||    
T  49359562 atttgctcataaggtgtgtcatta 49359539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 7568754 - 7568665
Alignment:
Q  153 atgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatg 242  Q
    ||||||||| || ||| | |||| || ||| |||||||| | ||| |||||| |||| ||||||||||||||| ||||||| ||||||||    
T  7568754 atgaagtcatgaaaattacttttttggtgaagttaaatggtaaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatg 7568665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 7568589 - 7568549
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  7568589 attaaacatagattctcatttgtgcactaagattgaaattc 7568549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 7758293 - 7758253
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  7758293 attaaacatagattctcatttgtgcactaagattgaaattc 7758253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 47930537 - 47930497
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  47930537 attaaacatagattctcatttgtgcactaagattgaaattc 47930497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 225
Target Start/End: Complemental strand, 47930700 - 47930629
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatg 225  Q
    |||||||| || ||||||||||||| ||| ||||||||| |||| |||||  |||| |||||||||| ||||    
T  47930700 tgaagtcatgaaaatgatttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatg 47930629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 277
Target Start/End: Complemental strand, 53811958 - 53811887
Alignment:
Q  206 atttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaaggtgtatcatta 277  Q
    |||| |||||||||| |||| ||||||| |||||||||||||   ||||||||| | |||||||| ||||||    
T  53811958 atttatgtatttaatccatgtcacgtcagattatatggtgtattccacatttgtacataaggtgtgtcatta 53811887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 32180781 - 32180695
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattata 240  Q
    |||||| | |||||||| ||||||  ||| |||||||| | ||| |||||| |||| ||||||||||| ||| ||||||| ||||||    
T  32180781 tgaagttatgagaatgacttttctagtgaagttaaatggttaatcattgagcatttgtgtatttaatttatgtcacgtcagattata 32180695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 45879357 - 45879317
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  45879357 attaaacatagattctcatttgtgcactaacattgaaattc 45879317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 51878292 - 51878332
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    ||||||||||||||||||||| || | ||||||||||||||    
T  51878292 attaaacatagattctcatttatgcactaagattgaaattc 51878332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 154 - 270
Target Start/End: Original strand, 2704526 - 2704640
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| ||||||| ||| |||||||||||||| ||||| ||||| ||||||||||||| | ||||||  |||||||||||||   |||    
T  2704526 tgaagtcatgaaaatgacttttctggtgaagttaaatgatcaatcattgaatatttgtgtatttaattcacgtcacgtc--attatatggtgtattgcac 2704623  T
Q  254 atttgtccgtaaggtgt 270  Q
    ||||| |||||||||||    
T  2704624 atttgcccgtaaggtgt 2704640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 2266890 - 2266767
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| ||||||  ||| |||||||  ||||| |||||| |||| |||||||||| |||| ||||| | |||| ||||||||  ||||    
T  2266890 tgaagtcatgataatgacttttctagtgaagttaaatcgtcaatcattgagcatttgtgtatttaatccatgccacgttagattacatggtgtattacac 2266791  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    |||||||  |||||||| ||||||    
T  2266790 atttgtctataaggtgtgtcatta 2266767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 9743633 - 9743727
Alignment:
Q  185 ttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaaggtgtatcattaaa 279  Q
    |||||||| ||||||||||  |||| |||||||||| ||||  ||||||||||||||||||||   ||||||| ||| ||| |||| ||||||||    
T  9743633 ttaaatgaccaattattgaacatttgtgtatttaatccatgtaacgtcatattatatggtgtattgcacatttttccataaagtgtttcattaaa 9743727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 1012340 - 1012433
Alignment:
Q  184 gttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaaggtgtatcatta 277  Q
    |||||||| | ||| || |||||||| |||||||||| |||| ||||||| |||||||||||||   |||||||| || |||||||| ||||||    
T  1012340 gttaaatggttaatcatcgagtatttgtgtatttaatccatgtcacgtcagattatatggtgtattgcacatttgcccataaggtgtgtcatta 1012433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 20097525 - 20097428
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaa----atgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||| |||||||| ||||||| ||| |||||    ||||||||| |||  | |||| ||||||||||||||| ||||||| ||||||| |||||    
T  20097525 tgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaattcatgccacgtcagattatatagtgta 20097428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 276
Target Start/End: Original strand, 17612349 - 17612470
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| ||||||||||||| | |||| |||||||| ||||| ||| || |||| |||| |||||||||| |||| || |||| ||| ||||   |||    
T  17612349 tgaagtcatgagaatgatttttttaatgaagttaaatggtcaatcattaagcatttgtgta-ttaattcatgtcacgccagattaaatgatgtatttcac 17612447  T
Q  254 atttgtccgtaaggtgtatcatt 276  Q
    ||||| |  |||||||| |||||    
T  17612448 atttgccaataaggtgtgtcatt 17612470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 2708051 - 2708091
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    ||||||||| |||||||||||||| | ||||||||||||||    
T  2708051 attaaacatggattctcatttgtgcactaagattgaaattc 2708091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 51204632 - 51204688
Alignment:
Q  189 atgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtg 245  Q
    ||||||||||||||||  ||| |||||||||| |||| ||| ||| |||||||||||    
T  51204632 atgatcaattattgagcttttgtgtatttaatccatgtcacatcagattatatggtg 51204688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 54995669 - 54995629
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||| ||||||||| ||||||||| ||||||||||||||    
T  54995669 attaaatatagattcttatttgtgtactaagattgaaattc 54995629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 24842 - 24758
Alignment:
Q  163 gagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||||||||||| |||  ||||||| ||||| |||||| |||| ||||||||||||||| ||||||| |||||||||||||    
T  24842 gagaatgatttttctggtgaaattaaatggtcaatcattgagcatttgtgtatttaattcatgtcacgtcagattatatggtgta 24758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 24686 - 24649
Alignment:
Q  276 taaacatagattctcatttgtgtattaagattgaaatt 313  Q
    |||||||||||||||||||||| | |||||||||||||    
T  24686 taaacatagattctcatttgtgcactaagattgaaatt 24649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 154 - 258
Target Start/End: Original strand, 4902354 - 4902458
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||| |||||| || |||  |||||||||||||||||||| |||| |||||||||| |||| ||||||| ||||||||||||| | |||    
T  4902354 tgaagtcatgaaaataatttttttggtgaatttaaatgatcaattattgagcatttatgtatttaatccatgtcacgtcagattatatggtgtatagcac 4902453  T
Q  254 atttg 258  Q
    |||||    
T  4902454 atttg 4902458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 155 - 247
Target Start/End: Complemental strand, 23402404 - 23402312
Alignment:
Q  155 gaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||||| |||||||| ||||||| ||| |||||||| ||||| |||||  || | ||||||||||||||| |||||||||||||||||||||    
T  23402404 gaagtcatgagaatgacttttctggtgaagttaaatggtcaatcattgaacatctgtgtatttaattcatgtcacgtcatattatatggtgta 23402312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 247
Target Start/End: Complemental strand, 37854326 - 37854235
Alignment:
Q  156 aagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||| |||||||| ||||||| |||  ||||||| |||||||||||| |||| |||||||||| |||| ||||||| |||||||||||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaaatggtcaattattgagcatttgtgtatttaatccatgtcacgtcacattatatggtgta 37854235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 154 - 247
Target Start/End: Complemental strand, 22955346 - 22955253
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||| | |||||||| ||||||| ||| |||||||| |||||||||||  |||| |||||||||| |||| ||||||| |||||||||||||    
T  22955346 tgaagtaatgagaatgacttttctggtgaagttaaatggtcaattattgaacatttgtgtatttaatccatgtcacgtcaaattatatggtgta 22955253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 277
Target Start/End: Original strand, 7742945 - 7743056
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaa 265  Q
    ||||| |||| |||||| || ||||||||||| ||||||||||| ||||||||||  ||| ||||| | |||||||||||||    |||||||||| |||    
T  7742945 aatgacttttttgatgaagtaaaatgatcaatcattgagtatttgtgtatttaatctatgtcacgttagattatatggtgtattgtacatttgtccataa 7743044  T
Q  266 ggtgtatcatta 277  Q
    || || ||||||    
T  7743045 ggcgtgtcatta 7743056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 277
Target Start/End: Original strand, 19786343 - 19786421
Alignment:
Q  199 attgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaaggtgtatcatta 277  Q
    |||||| |||| ||||||||||||||| |||||||||||||||| || |   |||||||||| ||||||||| ||||||    
T  19786343 attgagcatttgtgtatttaattcatgccacgtcatattatatgatgcattgcacatttgtctgtaaggtgtgtcatta 19786421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 8133560 - 8133500
Alignment:
Q  187 aaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||||||||| ||| || |||| ||||||||||||| ||||||||| |||||||||||||    
T  8133560 aaatgatcaatcattaagcatttgtgtatttaattcaagacacgtcagattatatggtgta 8133500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 5781544 - 5781623
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||||||||||| | | |||||||||||||| ||| | ||||| |||||||||| |||| ||||||  |||||||||||||    
T  5781544 aatgatttttctggtaaagttaaatgatcaatcattaaatatttgtgtatttaatccatgtcacgtc--attatatggtgta 5781623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 49002237 - 49002333
Alignment:
Q  150 tatatgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||||||| || |||||||||| | |||| || |||||| |||| ||||||||||| |||||||||| |||  ||  ||| |||||||||||||    
T  49002237 tatatgaagtcatgataatgattttttt-atgaagtgaaatgaacaatcattgagtatttgtgtatttaatccataccatatcagattatatggtgta 49002333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 5781694 - 5781734
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  5781694 attaaacatagattctcatttgtgcactaagattgaaattc 5781734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 313
Target Start/End: Complemental strand, 22955183 - 22955143
Alignment:
Q  273 cattaaacatagattctcatttgtgtattaagattgaaatt 313  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  22955183 cattaaacatagattctcatttgtgcactaagattgaaatt 22955143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 4618625 - 4618585
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| |  |||||||||||||    
T  4618625 attaaacatagattctcatttgtgcaccaagattgaaattc 4618585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 136
Target Start/End: Complemental strand, 19924217 - 19924158
Alignment:
Q  77 aaccaagaaaatatgccttctttaaaactccaaggaactaccaccatcaacccaattaaa 136  Q
    |||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  19924217 aaccaaaaaaagatgccttctttaaaactccaaggaactaccaccaccaacccaattaaa 19924158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 4108946 - 4108832
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| |||| || | | ||||||||| |||| ||||| ||||| ||||||||||| ||| ||||||  |||||||||||||   |||    
T  4108946 tgaagtcatgaaaatgacttttttggtaaagttaaatgaccaatcattgaatatttgtgtatttaattaatgccacgtc--attatatggtgtattgcac 4108849  T
Q  254 atttgtccgtaaggtgt 270  Q
    ||||| || ||||||||    
T  4108848 atttgcccataaggtgt 4108832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 23176656 - 23176616
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  23176656 attaaacatagattctcatttgtgcactaagattgaaattc 23176616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 4108784 - 4108744
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  4108784 attaaacatagattctcatttgtgcactaaaattgaaattc 4108744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 277
Target Start/End: Complemental strand, 13876941 - 13876830
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaa 265  Q
    ||||| |||| || ||| |||||||||||||| ||||||||||| ||||||||||  ||| |||||||||| ||||||||||  ||||||||| || |||    
T  13876941 aatgacttttatggtgaagttaaatgatcaatcattgagtatttgtgtatttaatcaatgccacgtcatatcatatggtgtattacacatttgcccataa 13876842  T
Q  266 ggtgtatcatta 277  Q
     |||| ||||||    
T  13876841 agtgtgtcatta 13876830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 16127536 - 16127627
Alignment:
Q  156 aagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||| || ||||| ||||||| ||| |||||||| ||||| |||||  |||| |||||||||| |||||||||||| |||||||| ||||    
T  16127536 aagtcatgaaaatgacttttctggtgaagttaaatggtcaatcattgatcatttgtgtatttaatccatgacacgtcagattatatgatgta 16127627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 10758304 - 10758241
Alignment:
Q  184 gttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    |||||||| ||||| |||||| |||| ||||||||||||||| ||| ||| |||||||||||||    
T  10758304 gttaaatggtcaatcattgagcatttgtgtatttaattcatgccacatcagattatatggtgta 10758241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 277
Target Start/End: Original strand, 27118346 - 27118467
Alignment:
Q  156 aagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacat 255  Q
    |||||| || ||||| |||| |||| | |||||||  | ||| || ||| |||| |||||||||| |||| |||||||||||||||| ||||   |||||    
T  27118346 aagtcatgaaaatgacttttttgataaagttaaatagttaatcatggagcatttatgtatttaatccatgccacgtcatattatatgatgtattgcacat 27118445  T
Q  256 ttgtccgtaaggtgtatcatta 277  Q
    |||| | |||||||| ||||||    
T  27118446 ttgttcataaggtgtgtcatta 27118467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Original strand, 25943376 - 25943415
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaatt 313  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  25943376 attaaacatagattctcatttgtgcaataagattgaaatt 25943415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 25943224 - 25943305
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||| ||||||  ||| ||||||||||||||||||||| |||  | ||||||||  | | ||||||| |||||||||||||    
T  25943224 aatgaattttctagtgaagttaaatgatcaattattgagcattagtttatttaatcgacgtcacgtcagattatatggtgta 25943305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 15964278 - 15964318
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    ||||||||||||||| |||||||| | ||||||||||||||    
T  15964278 attaaacatagattcacatttgtgcactaagattgaaattc 15964318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 16127695 - 16127735
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  16127695 attaaacatagattctcatttgtgcactaagattgagattc 16127735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 27118508 - 27118548
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||| ||| | ||||||||||||||    
T  27118508 attaaacatagattctcattcgtgcactaagattgaaattc 27118548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 406961 - 407012
Alignment:
Q  89 atgccttctttaaaactccaaggaactaccaccatcaacccaattaaattat 140  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  406961 atgccttctttaaatctccaaggaactaccaccaccaacccaattaaattat 407012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 277
Target Start/End: Complemental strand, 11084186 - 11084065
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||| | ||||||| | | ||||||||| |||| ||||| ||||| |||||||||| |||| ||||||||  |||||||||||  ||||    
T  11084186 tgaagtcatgaaaataacttttctggtaaagttaaatgaccaatcattgaatatttatgtatttaatccatgtcacgtcat--tatatggtgtattacac 11084089  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    ||||| || |||||||| ||||||    
T  11084088 atttgcccataaggtgtgtcatta 11084065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 19631763 - 19631886
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    ||||||||  ||||||| ||||||| ||| ||||||||| |||| |||||  |||| |||||||||| |||| ||||| | |||||||||||||   |||    
T  19631763 tgaagtcataagaatgacttttctggtgaagttaaatgaccaatcattgaacatttgtgtatttaatccatgtcacgttagattatatggtgtattgcac 19631862  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    ||||| |  |||||||| ||||||    
T  19631863 atttgcctataaggtgtttcatta 19631886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 26301795 - 26301755
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  26301795 attaaacatagattctcatttgtgtactaagattgaaattc 26301755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 11084024 - 11083984
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||  ||||||||||||||||    
T  11084024 attaaacatagattctcatttgttcattaagattgaaattc 11083984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 26301945 - 26301877
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcat 234  Q
    |||||||||| |  ||| ||||||||| |||| ||||| ||||| ||||||||||||||| ||||||||    
T  26301945 aatgatttttttcgtgaagttaaatgaccaatcattgaatatttatgtatttaattcatgtcacgtcat 26301877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 2996228 - 2996265
Alignment:
Q  22 tagcacattgaagcaatcaatagaagctagtggcaagc 59  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  2996228 tagcacattggagcaatcaatacaagctagtggcaagc 2996265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 34994009 - 34994049
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    ||||||||||||||||||||| || | ||||||||||||||    
T  34994009 attaaacatagattctcatttatgcactaagattgaaattc 34994049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 10237428 - 10237551
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| ||||||  ||| |||||||| ||||| |||||| |||| ||||||||||||||  ||||||| |||||||||||||   | |    
T  10237428 tgaagtcatgaaaatgacttttctagtgaagttaaatggtcaatcattgagcatttgtgtatttaattcatttcacgtcagattatatggtgtattgcgc 10237527  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    |||||||| |||||| | ||||||    
T  10237528 atttgtccataaggtatttcatta 10237551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 22616508 - 22616630
Alignment:
Q  154 tgaagtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacac 253  Q
    |||||||| || ||||| ||||||| ||| ||||||||  |||| |||||| ||| | ||||||||| |||| |||||||||||||||||||||    ||    
T  22616508 tgaagtcatgaaaatgacttttctggtgaagttaaatggccaatcattgagcattat-gtatttaatccatgtcacgtcatattatatggtgtattggac 22616606  T
Q  254 atttgtccgtaaggtgtatcatta 277  Q
    ||||| || |||||||| ||||||    
T  22616607 atttgcccataaggtgtgtcatta 22616630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 277
Target Start/End: Original strand, 31878427 - 31878520
Alignment:
Q  184 gttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaaggtgtatcatta 277  Q
    |||||||  ||||| ||| || |||| ||||||||||||||| ||||||| |||||||||||||   ||||||||||  |||||||| ||||||    
T  31878427 gttaaattgtcaatcattaagcatttgtgtatttaattcatgtcacgtcagattatatggtgtattgcacatttgtctataaggtgtgtcatta 31878520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 189 - 277
Target Start/End: Original strand, 25653633 - 25653721
Alignment:
Q  189 atgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacatttgtccgtaaggtgtatcatta 277  Q
    ||||||||| ||||||||||| ||||||||||||||  ||||||| ||| |||||||||   ||||||||  | |||||||| ||||||    
T  25653633 atgatcaatcattgagtatttgtgtatttaattcatatcacgtcagattgtatggtgtattgcacatttgctcataaggtgtgtcatta 25653721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 21320777 - 21320858
Alignment:
Q  166 aatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||| |||| |||||| |||||||||||||| |||||| |||  ||||||||| | ||| ||| ||| |||||||||||||    
T  21320777 aatgacttttttgatgaagttaaatgatcaatcattgagcattcgtgtatttaactaatgccacatcagattatatggtgta 21320858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 36055744 - 36055704
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  36055744 attaaacatagattctcatttgtgcactaagattgaaattc 36055704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 314
Target Start/End: Complemental strand, 41417449 - 41417409
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||||||||||||||    
T  41417449 attaaacatagattctcatttgtgcactaagattgaaattc 41417409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 26411345 - 26411404
Alignment:
Q  188 aatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgta 247  Q
    ||||| |||| ||||| ||||| |||||||||| |||| ||||||| |||||||||||||    
T  26411345 aatgaccaatcattgaatatttatgtatttaatacatgtcacgtcaaattatatggtgta 26411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 277
Target Start/End: Complemental strand, 36055904 - 36055785
Alignment:
Q  158 gtcaggagaatgatttttctgatgatgttaaatgatcaattattgagtatttttgtatttaattcatgacacgtcatattatatggtgtacaacacattt 257  Q
    |||| |||||||| ||||||  ||| |||||||| ||||| |||||| |||| || |||||||||||| | | ||| |||| ||||||||   |||||||    
T  36055904 gtcatgagaatgacttttcttgtgaagttaaatggtcaatcattgagcatttgtgaatttaattcatgtcgcatcagattacatggtgtattgcacattt 36055805  T
Q  258 gtccgtaaggtgtatcatta 277  Q
    |  | |||||||| ||||||    
T  36055804 gctcataaggtgtgtcatta 36055785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 22616671 - 22616711
Alignment:
Q  274 attaaacatagattctcatttgtgtattaagattgaaattc 314  Q
    |||||||||||||||||||||||| | ||| ||||||||||    
T  22616671 attaaacatagattctcatttgtgcactaaaattgaaattc 22616711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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