View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2170_high_7 (Length: 235)

Name: NF2170_high_7
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2170_high_7
NF2170_high_7
[»] chr2 (5 HSPs)
chr2 (1-219)||(18058480-18058699)
chr2 (157-211)||(31915042-31915096)
chr2 (160-213)||(8793874-8793927)
chr2 (156-213)||(19028419-19028476)
chr2 (162-220)||(8033260-8033318)
[»] chr8 (2 HSPs)
chr8 (1-67)||(19924080-19924146)
chr8 (160-220)||(16345999-16346059)
[»] chr6 (4 HSPs)
chr6 (157-220)||(2839061-2839124)
chr6 (1-67)||(407020-407086)
chr6 (157-213)||(23131437-23131493)
chr6 (157-207)||(31490414-31490464)
[»] chr5 (3 HSPs)
chr5 (157-213)||(33085339-33085395)
chr5 (157-220)||(35626650-35626713)
chr5 (157-218)||(42641177-42641238)
[»] chr4 (7 HSPs)
chr4 (158-220)||(36162133-36162195)
chr4 (157-213)||(2392580-2392636)
chr4 (160-210)||(41260001-41260051)
chr4 (157-206)||(14124264-14124313)
chr4 (163-219)||(37645321-37645377)
chr4 (157-209)||(37858267-37858319)
chr4 (162-210)||(45921337-45921385)
[»] chr3 (2 HSPs)
chr3 (157-215)||(3432674-3432732)
chr3 (162-210)||(19202183-19202231)
[»] chr1 (1 HSPs)
chr1 (159-213)||(38169117-38169171)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 7e-70; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 18058699 - 18058480
Alignment:
Q  1 ccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacacccatatactatgatgcatgacaatttcacaaaagtt 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  18058699 ccataactacaccgagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacacccagatactatcatgcatgacaatttcacaaaagtt 18058600  T
Q  101 tgtttttacacatttccaccgttcacactgtgttcacatatttttactc--aaaaagcaagtaaaaacttatattttcaggagaaagtttctattaatgg 198  Q
    ||||||||||||||||||||||||||| | |||| | | | ||||||||  ||||| |||||||||||||||||||||| || ||| |||||||||  ||    
T  18058599 tgtttttacacatttccaccgttcaca-tatgttaagagacttttactcaaaaaaaacaagtaaaaacttatattttcaagataaaatttctattagcgg 18058501  T
Q  199 attccttaaccaatgtcttta 219  Q
    ||| ||||| |||| ||||||    
T  18058500 atttcttaatcaatatcttta 18058480  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 31915096 - 31915042
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaa 211  Q
    ||||||| |||| |||||||| || |||||||||||||||||| |||||||||||    
T  31915096 aagtaaagacttgtattttcaagacaaagtttctattaatggaatccttaaccaa 31915042  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 213
Target Start/End: Original strand, 8793874 - 8793927
Alignment:
Q  160 taaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 213  Q
    ||||||||||||||| || || ||||||||||||| | ||||||||||||||||    
T  8793874 taaaaacttatatttccaagacaaagtttctattagtagattccttaaccaatg 8793927  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 19028476 - 19028419
Alignment:
Q  156 caagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 213  Q
    |||||||||||||| ||||||| || ||| ||| || |||||||||||||||||||||    
T  19028476 caagtaaaaacttacattttcaagacaaaatttatactaatggattccttaaccaatg 19028419  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 220
Target Start/End: Complemental strand, 8033318 - 8033260
Alignment:
Q  162 aaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttag 220  Q
    ||||||| |||||||| || |||||||||||||||| | ||||||| || |||||||||    
T  8033318 aaaacttgtattttcaagataaagtttctattaatgaaatccttaatcattgtctttag 8033260  T

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Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19924146 - 19924080
Alignment:
Q  1 ccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca 67  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||||    
T  19924146 ccataactacacgcagctgcacacctttggcaataaaagaaccaaatctgagcactaaaagcaccca 19924080  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 220
Target Start/End: Complemental strand, 16346059 - 16345999
Alignment:
Q  160 taaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttag 220  Q
    |||||||||||||||||| || ||| ||| |||||| ||||| ||| ||||||| ||||||    
T  16346059 taaaaacttatattttcaagacaaaatttttattaaaggattacttgaccaatgcctttag 16345999  T

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Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 2839061 - 2839124
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttag 220  Q
    ||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||| ||||    
T  2839061 aagtaaaaatttatattttcaagacaaagtttctactaatggattccttaaccaatgtccttag 2839124  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 407020 - 407086
Alignment:
Q  1 ccataactacacccagctgcacacctttggcagtaaaagaaccaaatctgagaactaaaaacaccca 67  Q
    ||||||||||||  ||||||||| |||||||| |||| |||||||||||||| |||| |||||||||    
T  407020 ccataactacacgtagctgcacatctttggcaataaaggaaccaaatctgagcactacaaacaccca 407086  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 23131493 - 23131437
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 213  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||||||| ||||||    
T  23131493 aagtaaaaatttatattttcaagacaaagtttctactaatggattccttatccaatg 23131437  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 31490414 - 31490464
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaa 207  Q
    ||||||||||||||||||||| ||  ||  |||||||||||||||||||||    
T  31490414 aagtaaaaacttatattttcaagatcaaaattctattaatggattccttaa 31490464  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 33085339 - 33085395
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 213  Q
    ||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||    
T  33085339 aagtaaaaatttatattttcaagacaaagtttctactaatggattccttaaccaatg 33085395  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 35626650 - 35626713
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttag 220  Q
    |||||||||||||||||||||  | ||| ||||||||||||||||||||||||| |||| ||||    
T  35626650 aagtaaaaacttatattttcaaaacaaaatttctattaatggattccttaaccattgtccttag 35626713  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 42641177 - 42641238
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtcttt 218  Q
    ||||||| |||| |||||||| || ||||||||||||||| || |||||||| | |||||||    
T  42641177 aagtaaagacttgtattttcaagacaaagtttctattaatagaatccttaactattgtcttt 42641238  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 36162195 - 36162133
Alignment:
Q  158 agtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtctttag 220  Q
    |||||||| |||||||| |  || ||||||||||||||||||||||||||| |||| ||||||    
T  36162195 agtaaaaatttatatttcctagacaaagtttctattaatggattccttaactaatgcctttag 36162133  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 213
Target Start/End: Complemental strand, 2392636 - 2392580
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 213  Q
    ||||||||||||  |||| || || |||||||||| |||||||||||||||||||||    
T  2392636 aagtaaaaacttgcatttacaagacaaagtttctactaatggattccttaaccaatg 2392580  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 41260051 - 41260001
Alignment:
Q  160 taaaaacttatattttcaggagaaagtttctattaatggattccttaacca 210  Q
    |||| |||| |||||||| || |||||||||||||||||| ||||||||||    
T  41260051 taaagacttgtattttcaagacaaagtttctattaatggaatccttaacca 41260001  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 206
Target Start/End: Original strand, 14124264 - 14124313
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattcctta 206  Q
    |||||||||||||||||| ||  | |||||||||||||||||| ||||||    
T  14124264 aagtaaaaacttatatttccaaaacaaagtttctattaatggaatcctta 14124313  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 37645377 - 37645321
Alignment:
Q  163 aaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtcttta 219  Q
    |||||| |||||||| || ||  ||| ||||||||||||||||||||||| ||||||    
T  37645377 aaacttgtattttcaagacaatatttatattaatggattccttaaccaatatcttta 37645321  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 37858267 - 37858319
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaacc 209  Q
    |||||||||||| |||||||| || |||||||||||||||  | |||||||||    
T  37858267 aagtaaaaacttgtattttcaagataaagtttctattaatcaaatccttaacc 37858319  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 45921385 - 45921337
Alignment:
Q  162 aaaacttatattttcaggagaaagtttctattaatggattccttaacca 210  Q
    |||||||||||||||| || ||| |||||||| || |||||||||||||    
T  45921385 aaaacttatattttcaagacaaattttctatttatagattccttaacca 45921337  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 3432674 - 3432732
Alignment:
Q  157 aagtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatgtc 215  Q
    ||||||| ||||||||||||| || |||||||||||||||||| || ||||||| ||||    
T  3432674 aagtaaacacttatattttcaagataaagtttctattaatggaatcattaaccattgtc 3432732  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 19202231 - 19202183
Alignment:
Q  162 aaaacttatattttcaggagaaagtttctattaatggattccttaacca 210  Q
    |||||||||||||||| || ||| | |||||| ||||||||||||||||    
T  19202231 aaaacttatattttcaagaaaaattatctatttatggattccttaacca 19202183  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Original strand, 38169117 - 38169171
Alignment:
Q  159 gtaaaaacttatattttcaggagaaagtttctattaatggattccttaaccaatg 213  Q
    |||| |||||||||||||| || |||| ||||||  |||||||||||||||||||    
T  38169117 gtaacaacttatattttcaagataaagcttctatatatggattccttaaccaatg 38169171  T

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