View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2170_low_12 (Length: 229)
Name: NF2170_low_12
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2170_low_12 |
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| [»] scaffold0726 (1 HSPs) |
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| [»] scaffold0557 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 45099445 - 45099307
Alignment:
| Q |
11 |
tttatttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaa |
109 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| || ||||||| |
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| T |
45099445 |
tttatttactaacccaatcatattttttgttacatttaaccaaatatatttagaaaggtataaaaaatgcaccaacattaataatgacagtaataaacaa |
45099346 |
T |
|
| Q |
110 |
aagacaattaaaacatgatcacgtatattaacaaatgat |
148 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45099345 |
aagacaattaaaacatgatcacgtatattaacaaatgat |
45099307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 19110453 - 19110321
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt--gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaa |
111 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||| || | |||||||||||| |||||||||||| |
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| T |
19110453 |
atttactaaccaaatcatatttttttgttacatttaaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaacaaaa |
19110357 |
T |
|
| Q |
112 |
gacaattaaaacatgatcacgtatattaacaaatga |
147 |
Q |
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|| |||||||| |||||||||||||||||||||||| |
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| T |
19110356 |
gagaattaaaaaatgatcacgtatattaacaaatga |
19110321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 12227917 - 12227791
Alignment:
| Q |
11 |
tttatttactaaccaaatcatat-ttttgttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaa |
109 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| || | |||||||||||| |||||||||| |
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| T |
12227917 |
tttatttactaaccaaatcatatattttgttacatttaaccaaatatatttagaaaggtataaaaaatgcaccaacattaataatgacattagtaaacaa |
12227818 |
T |
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| Q |
110 |
aagacaattaaaacatgatcacgtata |
136 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
12227817 |
aagacaattaaaacatgatcacatata |
12227791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0726 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0726
Description:
Target: scaffold0726; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 4196 - 4065
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||| ||||| ||| ||||||||||||||||| || | |||||||||||| ||||||||||||| |
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| T |
4196 |
atttactaaccaaatcatattttttgttacattaaacctaatat---tagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaacaaaag |
4100 |
T |
|
| Q |
113 |
acaattaaaacatgatcacgtatattaacaaatga |
147 |
Q |
| |
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| |||||||| |||||||||||||||||||||||| |
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| T |
4099 |
agaattaaaaaatgatcacgtatattaacaaatga |
4065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 14465141 - 14465272
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |||| ||| ||||||||||||||||| || | |||||||||||| ||||||||||||| |
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| T |
14465141 |
atttactaaccaaatcatattttttgttacatttgaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaacaaaag |
14465237 |
T |
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| Q |
113 |
acaattaaaacatgatcacgtatattaacaaatga |
147 |
Q |
| |
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| |||||||| |||||||||||||||||||||||| |
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| T |
14465238 |
aaaattaaaaaatgatcacgtatattaacaaatga |
14465272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 14 - 147
Target Start/End: Original strand, 18716974 - 18717105
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||| ||| ||||||||||||||||| || | |||||||||||| ||||||||||||| |
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| T |
18716974 |
atttactaaccaaatcatattttttgttaaatttaaccatatat---tagaaaggtataaaaaatgcaccaacattaataatgacagtagtaaacaaaag |
18717070 |
T |
|
| Q |
113 |
acaattaaaacatgatcacgtatattaacaaatga |
147 |
Q |
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| |||||||| |||||||||||||||||||||||| |
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| T |
18717071 |
agaattaaaaaatgatcacgtatattaacaaatga |
18717105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 8142 - 8271
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaag |
112 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| ||| ||||| ||||||||||| || | |||||||||||| ||||||||||||| |
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|
| T |
8142 |
atttactaaccaaatcatattttttgttacatttaaccatatat---tagaaaggtgtaaaaaatgcaccaacattaataatgacagtagtaaacaaaag |
8238 |
T |
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| Q |
113 |
acaattaaaacatgatcacgtatattaacaaat |
145 |
Q |
| |
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| |||||||| |||||||||||||||||||||| |
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| T |
8239 |
ataattaaaaaatgatcacgtatattaacaaat |
8271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 7963261 - 7963129
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaa-tgcatcagctttaataatgacaatagtaaacaaaa |
111 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| |||| ||| ||||||||||||| |||| || | |||||||||||| |||||||||||| |
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|
| T |
7963261 |
atttactaaccagatcatattttttgttacatttaaccatatat---tagaaaggtataaaaaaatgcaccaacattaataatgacagtagtaaacaaaa |
7963165 |
T |
|
| Q |
112 |
gacaattaaaacatgatcacgtatattaacaaatga |
147 |
Q |
| |
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|| |||||||| |||||||||||||||||||||||| |
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|
| T |
7963164 |
gagaattaaaaaatgatcacgtatattaacaaatga |
7963129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 147
Target Start/End: Complemental strand, 29467094 - 29466963
Alignment:
| Q |
14 |
atttactaaccaaatcatattttt-gttacatttaaccaaatatatttagtaaggtataaaaaatgcatcagctttaataatgacaatagtaaacaaaag |
112 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||| |||| || ||||||||||||||||| || | |||| ||||||| ||||||||||||| |
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|
| T |
29467094 |
atttactaatcaaatcatattttttgttatatttaaccatatat---taaaaaggtataaaaaatgcaccaacattaacaatgacagtagtaaacaaaag |
29466998 |
T |
|
| Q |
113 |
acaattaaaacatgatcacgtatattaacaaatga |
147 |
Q |
| |
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| |||||||| |||||||||||||||||||||||| |
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|
| T |
29466997 |
agaattaaaaaatgatcacgtatattaacaaatga |
29466963 |
T |
|
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