View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2170_low_14 (Length: 215)
Name: NF2170_low_14
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2170_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 24 - 198
Target Start/End: Original strand, 34067204 - 34067380
Alignment:
| Q |
24 |
tttttggatcaagagtacaactttataagttaaattcattaccaatagatgatactactaaaattgtaacaaagacaaacatatgtacttatcaaggagg |
123 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34067204 |
tttttggatcaagagtacagctttgcaagttaaattcattaccaaaagatgatactactaaaattgtaacaaagacaaacatatgtacttatcaaggagg |
34067303 |
T |
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| Q |
124 |
acccgagcatatactatttaaatactagtacaa--nnnnnnnncatttaaatatatgcataacttcaatgtatctat |
198 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
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| T |
34067304 |
acccgagcatatactatttaaatactagtacaattttttttttcatttaaatatatacataacttcattgtatctat |
34067380 |
T |
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