View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2170_low_3 (Length: 456)
Name: NF2170_low_3
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2170_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 46642850 - 46643289
Alignment:
| Q |
1 |
aaggaaatgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagat |
100 |
Q |
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| T |
46642850 |
aaggaaatgttcctaaaggcctctttgatctcaaacttgatgcacttttcatcaacaacaacaaattcaaattttctttaccagaaaatttcggaaagat |
46642949 |
T |
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| Q |
101 |
gccagcttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaggatacaatcaatgagataattatgacg |
200 |
Q |
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| T |
46642950 |
gccagcttctgttgttgtgttcgcgaacaatgatatacaaggttgtattccatcgagtgtagcgaatatgaaagatacaatcaacgagataattatgacg |
46643049 |
T |
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| Q |
201 |
aacagcaaaatgaaaggctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctg |
300 |
Q |
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| T |
46643050 |
aacagcagaatgaaaggctgtttacctaatgatataggaaaattggataaagtgacagtgtttgatgttagttttaatgagtttgttggtgaattgcctg |
46643149 |
T |
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| Q |
301 |
aaagtatcagtggaatgaaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgga |
400 |
Q |
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| T |
46643150 |
aaagtatcagtggaatgaaaagtttggagcagttgaatgtggcacataataaattttctggtgttattcctgagagtatatgtagattgccaaggttgaa |
46643249 |
T |
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| Q |
401 |
gaatttgacgtattcgtataattattttagtggtgaatca |
440 |
Q |
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|||||| ||||||||||||||||| | |||||||||||| |
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| T |
46643250 |
gaatttaacgtattcgtataattacctgagtggtgaatca |
46643289 |
T |
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