View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2170_low_4 (Length: 455)
Name: NF2170_low_4
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2170_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 182 - 443
Target Start/End: Complemental strand, 42395679 - 42395418
Alignment:
| Q |
182 |
taacaattctctaataatcaatannnnnnnaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactat |
281 |
Q |
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| T |
42395679 |
taacaattctctaataatcaatatttttttaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactat |
42395580 |
T |
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| Q |
282 |
cagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggaga |
381 |
Q |
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| T |
42395579 |
cagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggaga |
42395480 |
T |
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| Q |
382 |
gaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttc |
443 |
Q |
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| T |
42395479 |
gaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttc |
42395418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 42395855 - 42395703
Alignment:
| Q |
18 |
aaagaaactactgcaactgctaaaatggagctcaagaaagcaacaaccaggaaaaacacaagttttgcatgtaggattcatgaacatggtaagtcacctc |
117 |
Q |
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| T |
42395855 |
aaagaaactactgcaactgctaaaatggagcacaagaaagcaacaaccaggaaaaacacaagttttgcatgtagggttcatcaacatggtaagtcacctc |
42395756 |
T |
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| Q |
118 |
tctaaatatttacctcacattagtgttagattagttatgtgttcgttggtctacttggatctat |
181 |
Q |
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| T |
42395755 |
tctaaatatttacctcacat-----------tagttatgtgttcgttggtctacttggatctat |
42395703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 254 - 438
Target Start/End: Original strand, 29295916 - 29296100
Alignment:
| Q |
254 |
attgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttca |
353 |
Q |
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|||||||| ||| ||||||||||| | || |||||| ||||||||||||| ||||| ||||| | || || ||||||||||| ||||| |||||||||| |
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| T |
29295916 |
attgcagtgaaattaggtcctaaattttctgagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttca |
29296015 |
T |
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| Q |
354 |
agaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctgg |
438 |
Q |
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| T |
29296016 |
agcatatttttgggatgcaagaggaagagaaactcttgaaagcttctcagtgctatttatataccacagctggtcctattgctgg |
29296100 |
T |
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