View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2170_low_9 (Length: 241)

Name: NF2170_low_9
Description: NF2170
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2170_low_9
NF2170_low_9
[»] chr4 (4 HSPs)
chr4 (60-223)||(45099023-45099186)
chr4 (71-214)||(19110055-19110197)
chr4 (1-38)||(45099205-45099242)
chr4 (1-38)||(19110231-19110268)
[»] chr6 (4 HSPs)
chr6 (71-214)||(18717243-18717386)
chr6 (61-162)||(14465404-14465501)
chr6 (1-38)||(14465340-14465377)
chr6 (1-38)||(18717172-18717209)
[»] scaffold0726 (2 HSPs)
scaffold0726 (71-214)||(3783-3926)
scaffold0726 (1-38)||(3960-3997)
[»] chr2 (2 HSPs)
chr2 (72-214)||(29466680-29466820)
chr2 (1-38)||(29466855-29466892)
[»] scaffold0557 (1 HSPs)
scaffold0557 (71-214)||(8412-8554)
[»] chr1 (1 HSPs)
chr1 (151-209)||(42956244-42956302)


Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 60 - 223
Target Start/End: Complemental strand, 45099186 - 45099023
Alignment:
Q  60 gtattatgctatttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataatt 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45099186 gtattatgctatttgatgttaatatctttgtgtgaatcaattgtttactatattttaatttcaatcataaaaaatgagtaattgacagttgaaaataatt 45099087  T
Q  160 gaaaatttgaaatagatggtaattgaagtgagatgcacgttgttgaagaatagtcggttagtca 223  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45099086 gaaaacttgaaatagatggtaattgaagtgagatgcacgttgttgaagaatagtcagttagtca 45099023  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 19110197 - 19110055
Alignment:
Q  71 tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa 170  Q
    |||||||||||||| ||||| |||||||||| |||||| ||||||||||||||||| |||||||||| |||| ||||||||||||||||||| | |||||    
T  19110197 tttgatgttaatat-tttgtatgaatcaattttttactatattttaatttcaatcacaaaaaatgagcaattgacagttgaaaataattgaacacttgaa 19110099  T
Q  171 atagatggtaattgaagtgagatgcacgttgttgaagaatagtc 214  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||    
T  19110098 atagatggtaatttaagtgagatgcacattgttgaagaatagtc 19110055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 45099242 - 45099205
Alignment:
Q  1 attagagtaaatcgaaaaatgataaagatatggatgag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45099242 attagagtaaatcgaaaaatgataaagatatggatgag 45099205  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19110268 - 19110231
Alignment:
Q  1 attagagtaaatcgaaaaatgataaagatatggatgag 38  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  19110268 attagagtaaattgaaaaatgataaagatagggatgag 19110231  T

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Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 18717243 - 18717386
Alignment:
Q  71 tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa 170  Q
    |||||||||||||| ||||||||||||||||  ||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | |||||    
T  18717243 tttgatgttaatatttttgtgtgaatcaatttcttactatattttaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacacttgaa 18717342  T
Q  171 atagatggtaattgaagtgagatgcacgttgttgaagaatagtc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18717343 atagatggtaattgaagtgagatgcacgttgttgaagaatagtc 18717386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 61 - 162
Target Start/End: Original strand, 14465404 - 14465501
Alignment:
Q  61 tattatgctatttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattg 160  Q
    |||||||||||||||||||||||| |||||||||||||    |||| | ||||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  14465404 tattatgctatttgatgttaatatttttgtgtgaatca----tttattatattttaatttcaatcacaaaaaatgagtaattgatagttgaaaataattg 14465499  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14465340 - 14465377
Alignment:
Q  1 attagagtaaatcgaaaaatgataaagatatggatgag 38  Q
    |||||||||||| |||||||||||||||||||||||||    
T  14465340 attagagtaaattgaaaaatgataaagatatggatgag 14465377  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18717172 - 18717209
Alignment:
Q  1 attagagtaaatcgaaaaatgataaagatatggatgag 38  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  18717172 attagagtaaattgaaaaatgataaagatagggatgag 18717209  T

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Target: scaffold0726 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 3926 - 3783
Alignment:
Q  71 tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa 170  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||||||||| | |||||    
T  3926 tttgatgttaatatttttgtgtgaatcaattttttactatattttaatttcaatcacaaaaaattagtaattgacagttgaaaataattgaatacttgaa 3827  T
Q  171 atagatggtaattgaagtgagatgcacgttgttgaagaatagtc 214  Q
    ||||||||||||| |||||||||||||||||||||| |||||||    
T  3826 atagatggtaattaaagtgagatgcacgttgttgaaaaatagtc 3783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3997 - 3960
Alignment:
Q  1 attagagtaaatcgaaaaatgataaagatatggatgag 38  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  3997 attagagtaaattgaaaaatgataaagatagggatgag 3960  T

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Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 72 - 214
Target Start/End: Complemental strand, 29466820 - 29466680
Alignment:
Q  72 ttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaaa 171  Q
    ||||||||||||| |||||||||||||||| ||||||  ||| |||||||||||| ||||||||||||||| ||||||||||||||||||| | ||||||    
T  29466820 ttgatgttaatatttttgtgtgaatcaattttttact--attctaatttcaatcacaaaaaatgagtaattgacagttgaaaataattgaacaattgaaa 29466723  T
Q  172 tagatggtaattgaagtgagatgcacgttgttgaagaatagtc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  29466722 tagatggtaattgaagtgagatgcacgttgttgaagaatagtc 29466680  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 29466892 - 29466855
Alignment:
Q  1 attagagtaaatcgaaaaatgataaagatatggatgag 38  Q
    |||||||||||| ||||||||||||||||| |||||||    
T  29466892 attagagtaaattgaaaaatgataaagatagggatgag 29466855  T

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Target: scaffold0557 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0557
Description:

Target: scaffold0557; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 8412 - 8554
Alignment:
Q  71 tttgatgttaatatctttgtgtgaatcaattgtttactgtattttaatttcaatcataaaaaatgagtaattaacagttgaaaataattgaaaatttgaa 170  Q
    |||||||||||||| ||| | |||||||||| |||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||||| | |||||    
T  8412 tttgatgttaatatttttatatgaatcaatt-tttactatattttaatttcaatcacaaaaaatgagtaattgatagttgaaaataattgaacacttgaa 8510  T
Q  171 atagatggtaattgaagtgagatgcacgttgttgaagaatagtc 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8511 atagatggtaattgaagtgagatgcacgttgttgaagaatagtc 8554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 42956302 - 42956244
Alignment:
Q  151 aaaataattgaaaatttgaaatagatggtaattgaagtgagatgcacgttgttgaagaa 209  Q
    |||||||||||| | ||||||||| |||||||  ||||||||| |||||| ||||||||    
T  42956302 aaaataattgaacacttgaaatagttggtaataaaagtgagatacacgttattgaagaa 42956244  T

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