View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2171_high_10 (Length: 299)

Name: NF2171_high_10
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2171_high_10
NF2171_high_10
[»] scaffold0155 (1 HSPs)
scaffold0155 (1-282)||(25803-26084)


Alignment Details
Target: scaffold0155 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 25803 - 26084
Alignment:
Q  1 catcttttgcgagtattgggcatatatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctatttgtgaagccatgtctgg 100  Q
    |||| ||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25803 catcctttgcaagtattgggctagtatcatttttatgcagactatcaatacaatcatcaatgtgttgcataacaaaacctatttgtgaagccatgtctgg 25902  T
Q  101 ataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaatgagtataatagtttctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25903 ataatttttgagctccaaatctattttcgcacccaaaagcctaccgcgaatgctatcatcgccatcgaaatctattgcacaacgagtataatagtttctt 26002  T
Q  201 accgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttg 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26003 accgtaacatttctttgcaaattaatgacaagtttgtatgcaatatagaaattgtccttaaccacaccaatagtgtaatttg 26084  T

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