View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_high_16 (Length: 240)
Name: NF2171_high_16
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_high_16 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 125 - 240
Target Start/End: Complemental strand, 471674 - 471559
Alignment:
| Q |
125 |
cagaaggtaagtactaaccaagtacagaaaaaccatgaataagagaaaagtgtcacctctttctcattgcacataggaatctgaacaagtaccaaaggaa |
224 |
Q |
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| T |
471674 |
cagaaggtaagtactaaccaagtacagaaaaaccatgaataagagaaaagtgtcacctctttctcattgcacataggaatctgaacaagtaccagaggaa |
471575 |
T |
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| Q |
225 |
agccatggttggaacc |
240 |
Q |
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| T |
471574 |
agccatggttggaacc |
471559 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 471783 - 471721
Alignment:
| Q |
16 |
aacaaacattaagtggccttacttgatgattgactagttttgaaataaggtcgccaccgacaa |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
471783 |
aacaaacattaagtggccttacttgatgattgactagttttgaaataaggtcgccaccgacaa |
471721 |
T |
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