View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2171_high_6 (Length: 332)

Name: NF2171_high_6
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2171_high_6
NF2171_high_6
[»] chr4 (4 HSPs)
chr4 (43-269)||(50907218-50907444)
chr4 (267-317)||(50940323-50940373)
chr4 (43-75)||(55175337-55175369)
chr4 (15-44)||(12624656-12624685)
[»] chr5 (2 HSPs)
chr5 (43-99)||(17204476-17204532)
chr5 (9-45)||(39690595-39690631)
[»] chr1 (3 HSPs)
chr1 (9-45)||(15512890-15512926)
chr1 (9-45)||(28949073-28949109)
chr1 (8-45)||(51996912-51996949)
[»] chr2 (1 HSPs)
chr2 (9-44)||(17663584-17663619)
[»] chr6 (1 HSPs)
chr6 (9-46)||(19838889-19838926)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 43 - 269
Target Start/End: Original strand, 50907218 - 50907444
Alignment:
Q  43 tatgaatattttcaaaagtgagtacaagcctgatgataccagtaggtgatttacaagtgaacttttataatgtgcttgagtataattcataaattaatct 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50907218 tatgaatattttcaaaagtgagtacaagcctgatgataccagtaggtgatttacaagtgaacttttataatgtgcttgagtataattcataaattaatct 50907317  T
Q  143 gcttgtgtgtggggatgtcgattcatacacacgtaatgtaagattgtttatgatctgccaaagggatgaattgatgacaagaattcttcactggaaatag 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50907318 gcttgtgtgtggggatgtcgattcatacacacgtaatgtaagattgtttatgatctgccaaagggatgaattgatgacaagaattcttcactggaaatag 50907417  T
Q  243 caaagttaagccaaagaaacatgaaat 269  Q
    |||||||||||||||||||||||||||    
T  50907418 caaagttaagccaaagaaacatgaaat 50907444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 267 - 317
Target Start/End: Original strand, 50940323 - 50940373
Alignment:
Q  267 aattagtgtaattgctcgcaactaccttgctacggtcacagtgaaatttgt 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  50940323 aattagtgtaattgctcgcaactaccttgctacggtcacggtgaaatttgt 50940373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 55175337 - 55175369
Alignment:
Q  43 tatgaatattttcaaaagtgagtacaagcctga 75  Q
    |||||||||||||||||||||||||||||||||    
T  55175337 tatgaatattttcaaaagtgagtacaagcctga 55175369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Complemental strand, 12624685 - 12624656
Alignment:
Q  15 ggggggttacatatagggacggagggagta 44  Q
    ||||||||||||||||||||||||||||||    
T  12624685 ggggggttacatatagggacggagggagta 12624656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 17204476 - 17204532
Alignment:
Q  43 tatgaatattttcaaaagtgagtacaagcctgatgataccagtaggtgatttacaag 99  Q
    |||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||    
T  17204476 tatgaatattttcaaacgtgagtacaagcctgaagatactagtaggtgatttacaag 17204532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 39690595 - 39690631
Alignment:
Q  9 agcataggggggttacatatagggacggagggagtat 45  Q
    |||| ||||||||||||||||||||||||||||||||    
T  39690595 agcaaaggggggttacatatagggacggagggagtat 39690631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 15512890 - 15512926
Alignment:
Q  9 agcataggggggttacatatagggacggagggagtat 45  Q
    |||| ||||||||||||||||||||||||||||||||    
T  15512890 agcaaaggggggttacatatagggacggagggagtat 15512926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 45
Target Start/End: Original strand, 28949073 - 28949109
Alignment:
Q  9 agcataggggggttacatatagggacggagggagtat 45  Q
    |||| ||||||||||||||||||||||||||||||||    
T  28949073 agcaaaggggggttacatatagggacggagggagtat 28949109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 51996949 - 51996912
Alignment:
Q  8 tagcataggggggttacatatagggacggagggagtat 45  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  51996949 tagcaaagggggtttacatatagggacggagggagtat 51996912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 44
Target Start/End: Complemental strand, 17663619 - 17663584
Alignment:
Q  9 agcataggggggttacatatagggacggagggagta 44  Q
    |||| |||||||||||||||||||||||||||||||    
T  17663619 agcaaaggggggttacatatagggacggagggagta 17663584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 19838926 - 19838889
Alignment:
Q  9 agcataggggggttacatatagggacggagggagtatg 46  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  19838926 agcaaagggggattacatatagggacggagggagtatg 19838889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University