View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2171_low_1 (Length: 419)
Name: NF2171_low_1
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2171_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Original strand, 6170652 - 6171044
Alignment:
| Q |
12 |
aagaaaaaatacatggaggggnnnnnnnngtagctggaatgatttaccagaaattccaaagtgttaaatgtattccaagttgaggtacaaggttctcaac |
111 |
Q |
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| T |
6170652 |
aagaaaaaatacatggaggggaaaagaaagtagctggaatgatttaccagaaattccaaagtgttaaatgtattccaagttgaggtacaaggttctcaac |
6170751 |
T |
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| Q |
112 |
taaatctaatgaaagaagacgtgttgctgtcctagaacactgaaaatctgggcacagggaacacttttgctgctgaaatattgggtgccatgagagctgt |
211 |
Q |
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| T |
6170752 |
taaatctaatgaaagaagacgtgttgctgtcctagaacactgaaaatctgggcacagggaacacttttgctgctgaaatattgggtgccatgagagctgt |
6170851 |
T |
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| Q |
212 |
agagcttgcgggtcaatataattggaaatatctttggttggagtcagattctgtcctggttgtccaagccttcagcaacaaaaatcttgcaccttggcag |
311 |
Q |
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| T |
6170852 |
agagcttgcgggtcaatataattggaaatatctttggttggaatcagattctgtcctggttgtccaagccttcagcaacaaaaatcttgtaccttggcag |
6170951 |
T |
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| Q |
312 |
ttaagaaaccgctgggaaaattgcattgctctcttatcttcaatgaaattcatggtatcccatgtgtatagagaaggtaacctatgtgcagac |
404 |
Q |
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| T |
6170952 |
ttaagaaaccgctgggaaaattgcattgctctcttatcttcaatgaacttcatggcatcccatgtgtatagagaaggtaacctatgtgcagac |
6171044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 35099107 - 35098999
Alignment:
| Q |
41 |
gtagctggaatgatttaccagaaattccaaagtgttaaatgtattccaagttgaggtacaaggttctcaactaaatctaatgaaagaagacgtgttgctg |
140 |
Q |
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| T |
35099107 |
gtagctggaatgatttaccagaaattctaaagtgttaattgtattccaagttgaggtacaaagttctcaactaaatctaatgaaagaagacgtgttgctt |
35099008 |
T |
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| Q |
141 |
tcctagaac |
149 |
Q |
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||||||||| |
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| T |
35099007 |
tcctagaac |
35098999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 405
Target Start/End: Complemental strand, 18252008 - 18251798
Alignment:
| Q |
195 |
ggtgccatgagagctgtagagcttgcgggtcaatataattggaaatatctttggttggagtcagattctgtcctggttgtccaagccttcagcaacaaaa |
294 |
Q |
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| T |
18252008 |
ggtgccatgagagctattgagctggccaaacaatataattggaaaaatctctggttggaatcagattctatcttagtgatccaagcttttaacaacaaaa |
18251909 |
T |
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| Q |
295 |
atcttgcaccttggcagttaagaaaccgctgggaaaattgcattgctctcttatcttcaatgaaattcatggtatcccatgtgtatagagaaggtaacct |
394 |
Q |
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|||||| |||| ||| |||| ||| | |||||||| |||||| | ||||| || ||| | ||||||||| | ||||||||||||| || ||| | |
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| T |
18251908 |
atcttgttcctttgcaattaaagaacagatgggaaaactgcattttcttattatcctctatgcatttcatggtaactcatgtgtatagagcagataatca |
18251809 |
T |
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| Q |
395 |
atgtgcagact |
405 |
Q |
| |
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||| ||||||| |
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| T |
18251808 |
atgcgcagact |
18251798 |
T |
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