View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2171_low_10 (Length: 305)

Name: NF2171_low_10
Description: NF2171
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2171_low_10
NF2171_low_10
[»] chr7 (24 HSPs)
chr7 (16-187)||(4783119-4783290)
chr7 (16-187)||(4815548-4815719)
chr7 (184-302)||(4783311-4783429)
chr7 (184-302)||(4815740-4815858)
chr7 (23-186)||(4654137-4654297)
chr7 (17-186)||(4711372-4711538)
chr7 (17-186)||(4845300-4845466)
chr7 (16-132)||(4696465-4696578)
chr7 (16-171)||(4637510-4637662)
chr7 (27-186)||(4644336-4644492)
chr7 (184-284)||(4644214-4644314)
chr7 (16-186)||(4673344-4673511)
chr7 (16-171)||(4663346-4663498)
chr7 (24-186)||(4864566-4864725)
chr7 (226-297)||(4654002-4654073)
chr7 (226-290)||(4711590-4711654)
chr7 (226-297)||(4696708-4696779)
chr7 (226-305)||(4845530-4845609)
chr7 (226-299)||(4637361-4637434)
chr7 (226-282)||(4864446-4864502)
chr7 (102-153)||(4667612-4667663)
chr7 (152-187)||(4696610-4696645)
chr7 (226-295)||(4631438-4631507)
chr7 (226-282)||(4673224-4673280)
[»] chr4 (1 HSPs)
chr4 (99-152)||(18925112-18925165)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 3e-85; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 4783119 - 4783290
Alignment:
Q  16 aaatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 115  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783119 aaatatccaaattccattcacaaccgtacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 4783218  T
Q  116 catttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaac 187  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4783219 catttttacccaacttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaac 4783290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 187
Target Start/End: Original strand, 4815548 - 4815719
Alignment:
Q  16 aaatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 115  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4815548 aaatacccaaattccattcacaaccggacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 4815647  T
Q  116 catttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaac 187  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  4815648 catttttacccaacttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaacaacaac 4815719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 4783311 - 4783429
Alignment:
Q  184 caacccttcactttggcttcatcgtgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattccc 283  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4783311 caacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattccc 4783410  T
Q  284 aacaacacaaaccaattga 302  Q
    |||||||||||||||||||    
T  4783411 aacaacacaaaccaattga 4783429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 184 - 302
Target Start/End: Original strand, 4815740 - 4815858
Alignment:
Q  184 caacccttcactttggcttcatcgtgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattccc 283  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  4815740 caacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattccc 4815839  T
Q  284 aacaacacaaaccaattga 302  Q
    |||||||||||||||||||    
T  4815840 aacaacacaaaccaattga 4815858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 4654297 - 4654137
Alignment:
Q  23 caaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcattttt 122  Q
    ||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||  |||   ||| || |||||   |||||||||||||    
T  4654297 caaattccattcacaaccgcacgtatctctctctcatatttcacatactcattttctaacatcactact---tcccctgtttttaaccgccttcattttt 4654201  T
Q  123 acccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaa 186  Q
    |||| ||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  4654200 accctacttcgtatcaaaaatttgaaccctcaaatgcacttttctctgttgaagtaaacaacaa 4654137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 4711372 - 4711538
Alignment:
Q  17 aatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttc 116  Q
    |||||| | |||||| |||||||||| |||  |||||||||||||||||||||||||||||||| |||||   ||||| || || ||||| || ||||||    
T  4711372 aatatcgatattccactcacaaccgcgcgtatctctctctcaaatttcacatactcattttctagcatca---ctaacacccctgtttttattagccttc 4711468  T
Q  117 atttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaa 186  Q
    ||||||||||||||||||| ||||| |||||  |||| ||||| |||||||||||  |||||||||||||    
T  4711469 atttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaa 4711538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 4845300 - 4845466
Alignment:
Q  17 aatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttc 116  Q
    |||||||||||||||||||||||||| | |  |||| ||||||||||||||||||||||||||| |||  || |||  ||| || ||||| |||||||||    
T  4845300 aatatccaaattccattcacaaccgcgcatatctctttctcaaatttcacatactcattttctagcat--tc-ctagttcccctgtttttattcgccttc 4845396  T
Q  117 atttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaa 186  Q
    ||||||||||||||||||| || || |||||  |||| ||||| ||||||||||| ||||||||||||||    
T  4845397 atttttacccaacttcataccagaactttgatccctccaatgctcttttctctgtcgaagtaaacaacaa 4845466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 4696465 - 4696578
Alignment:
Q  16 aaatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 115  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||   | ||||||||  ||| || ||||||||||||||    
T  4696465 aaatatccaaattccattcacaaccgcacgtgtctctctctcaaatttcacatactcttttcct---agcatcactacttcccctgtttttcttcgcctt 4696561  T
Q  116 catttttacccaacttc 132  Q
    ||||||||||| |||||    
T  4696562 catttttacccgacttc 4696578  T

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Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 4637662 - 4637510
Alignment:
Q  16 aaatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 115  Q
    |||||||||| |||||| ||||  ||||||||  ||||||||||||||||||||||||||||||   | ||||||||| |||||| |||||||||| |||    
T  4637662 aaatatccaagttccatacacacacgcacgtgtttctctctcaaatttcacatactcattttct---agcatcactaattccactgtttttcttcgtctt 4637566  T
Q  116 catttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgt 171  Q
    ||||||||||| || || |||||||| |||||| | || | |||| ||||||||||    
T  4637565 catttttaccctacatcttatcaaaactttgaaccttccagtgcaattttctctgt 4637510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 4644492 - 4644336
Alignment:
Q  27 ttccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcatttttaccc 126  Q
    |||||| ||||  |||||||| |||| |||||||||| |||||||||||||||| |||||   ||   ||| || |||||||||||||| ||||||||||    
T  4644492 ttccatacacacacgcacgtgtctctttctcaaattttacatactcattttctagcatca---ctgtttcccctgtttttcttcgcctttatttttaccc 4644396  T
Q  127 aacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaa 186  Q
      | || ||||||||||||||| ||||||||||||||||||||||  |||||||||||||    
T  4644395 tgcatcgtatcaaaattttgaaccctcaaatgcacttttctctgtcaaagtaaacaacaa 4644336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 4644314 - 4644214
Alignment:
Q  184 caacccttcactttggcttcatcgtgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattccc 283  Q
    ||||||||||||||||||||||| |||||||||| ||||| ||||||| |||| ||||||||| ||| |||| |||||||||||||||| ||||||||||    
T  4644314 caacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccc 4644215  T
Q  284 a 284  Q
    |    
T  4644214 a 4644214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 4673511 - 4673344
Alignment:
Q  16 aaatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 115  Q
    |||||||||| |||||| ||||  ||||||||  ||||||||||||||||||||||||||||||   | ||||||||| |||||| ||||||||||||||    
T  4673511 aaatatccaagttccatacacacacgcacgtgtttctctctcaaatttcacatactcattttct---agcatcactaattccactgtttttcttcgcctt 4673415  T
Q  116 catttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaa 186  Q
    ||||||||||||| || || | |||  |||||  |||| |||||| |||||||| |  |||| ||||||||    
T  4673414 catttttacccaaatttatctaaaagctttgatccctccaatgcaattttctctatcaaagttaacaacaa 4673344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 171
Target Start/End: Complemental strand, 4663498 - 4663346
Alignment:
Q  16 aaatatccaaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgcctt 115  Q
    |||||||| ||||||| ||| ||||||||||  ||| |||||||||||||||||||||||| ||| ||||    |||  | | || ||||||||||||||    
T  4663498 aaatatcccaattccactcaaaaccgcacgtatctcgctctcaaatttcacatactcatttcctaccatcc---ctagttgccctgtttttcttcgcctt 4663402  T
Q  116 catttttacccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgt 171  Q
    ||||||||| |||| || ||| |||| |||||| |||| |||||||||||||||||    
T  4663401 catttttactcaacatcttataaaaactttgaaccctccaatgcacttttctctgt 4663346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 186
Target Start/End: Complemental strand, 4864725 - 4864566
Alignment:
Q  24 aaattccattcacaaccgcacgtgcctctctctcaaatttcacatactcattttctaacatcatcactaactccactatttttcttcgccttcattttta 123  Q
    ||||||||| ||||||||| |||  ||||||||||| ||||||||| |||||||||| |||||   |||  ||  || ||||| |||| |||||||||||    
T  4864725 aaattccatacacaaccgcgcgtatctctctctcaagtttcacatattcattttctaccatca---ctagttcgcctgtttttgttcgtcttcattttta 4864629  T
Q  124 cccaacttcatatcaaaattttgaaacctcaaatgcacttttctctgttgaagtaaacaacaa 186  Q
    |||||| || |||||||| |||||| | || || ||| |||| || |||||||||||||||||    
T  4864628 cccaacatcttatcaaaactttgaaccttcgaaagcatttttttcagttgaagtaaacaacaa 4864566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 4654073 - 4654002
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaacca 297  Q
    ||||||||||| ||||||| || |||| ||  ||||||||||||||| ||||||||||||||||||||||||    
T  4654073 caaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaacca 4654002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 4711590 - 4711654
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaaca 290  Q
    ||||||||||| ||| |||||||||||||| |||||||||| ||||| ||||||||| |||||||    
T  4711590 caaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattccaaacaaca 4711654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 4696708 - 4696779
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaacca 297  Q
    ||||||||||| ||| |||| ||||||||| |||||| ||||||||| ||||||||||| ||||| ||||||    
T  4696708 caaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattcccagcaacataaacca 4696779  T

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Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 4845530 - 4845609
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaattgaatc 305  Q
    ||||||||||| ||| || ||||||||||| | |||||||||||||| |||| |||| ||||||| |||| |||||||||    
T  4845530 caaagaatattgcattcagatcaaaccaaatgggaagctaaacataactttctttccgaacaacataaacgaattgaatc 4845609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 4637434 - 4637361
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaaccaat 299  Q
    ||||||||||| ||| |||||||||||||| || ||| ||||||||| ||||||||| |||| || ||||||||    
T  4637434 caaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcctaacagcataaaccaat 4637361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 4864502 - 4864446
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcc 282  Q
    ||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||    
T  4864502 caaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 4667663 - 4667612
Alignment:
Q  102 tttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacctc 153  Q
    ||||||||||||| |||||||||||||| || |||||||| |||||||||||    
T  4667663 tttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctc 4667612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 4696610 - 4696645
Alignment:
Q  152 tcaaatgcacttttctctgttgaagtaaacaacaac 187  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4696610 tcaaatgcacttttctctgttaaagtaaacaacaac 4696645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 295
Target Start/End: Complemental strand, 4631507 - 4631438
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcccaacaacacaaac 295  Q
    ||||||||||| ||| |||||    ||||| |||||||||||||||| |||||||||||| || ||||||    
T  4631507 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 4631438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 4673280 - 4673224
Alignment:
Q  226 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataagtttcattcc 282  Q
    |||||||| ||  ||||||||||| || || |||||||||||||||| |||||||||    
T  4673280 caaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 18925112 - 18925165
Alignment:
Q  99 ctatttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacct 152  Q
    ||||||||||||||||||||||||||||||| || |||||||| ||||||||||    
T  18925112 ctatttttcttcgccttcatttttacccaacatcgtatcaaaactttgaaacct 18925165  T

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